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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccgccgccgcccccttttttgccaccagactccgccgcggcgtgcggggtttgtgagatctagtggcctgcgtagccatcttgccgcgcgctggtttaactaatggttttgcttgtttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG

Basic information

species Zea mays
transcript GRMZM2G039263_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G039263_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g46620.1 (Oryza sativa), 3'ss of exon 1
------------gtaaccgccgccgcccccttttttgccaccagactccgccgcggcgtgcggggttt--gtgagatctagtggcctgcgtagccatcttgccgcgcgctggtttaactaatggttttgcttgtttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG
                || ||  |   |||||    ||| ||||| ||||  | | || |  ||||||  || ||||||||||||  |  | ||| ||  | |||| |  | ||| |        ||| ||| | |||| |||||| |||| |||  |||||||||||||||||| || |||||||| || ||||| || |||||||||
gtaactcgtctctccccctcctgcaagcccttccccgccgccagattccgtggagtcgcggcgggtttttgtaagatctagtggcacgactcgccgtccggacgcggg--gatttga--------tttccttctctgattgcagTGGTGGCGTGCCAGGCGGTGGCCAACATCGTTAAGTCCTCGCTTGGGCCCGTGGGGCTCGACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211378059|gb|FL215190.1|FL215190
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|6021928|gb|AW066856.1|AW066856
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGNGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211243917|gb|FL215137.1|FL215137
EST:     CGACATCCTCGGCGAGCKCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211250615|gb|FL215178.1|FL215178
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211380719|gb|FL215213.1|FL215213
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211383349|gb|FL215222.1|FL215222
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211246157|gb|FL215157.1|FL215157
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211250617|gb|FL215180.1|FL215180
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211380718|gb|FL215212.1|FL215212
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCGTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|149010855|gb|EE042239.2|EE042239
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211250616|gb|FL215179.1|FL215179
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211248384|gb|FL215161.1|FL215161
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211250625|gb|FL215188.1|FL215188
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211378064|gb|FL215195.1|FL215195
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211248396|gb|FL215173.1|FL215173
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211243918|gb|FL215138.1|FL215138
EST:     CNAGTCCTCGGCGAGCGNCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: C-A-TCCTCGGCGAGCG-CCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211248392|gb|FL215169.1|FL215169
EST:     CGACATCCTCGGCGAGCGCCAGTYCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211250618|gb|FL215181.1|FL215181
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211383350|gb|FL215223.1|FL215223
EST:     CGACATCCTCGGCGATCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCGTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211246150|gb|FL215150.1|FL215150
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211490021|gb|FL368148.1|FL368148
EST:     CGACATCCTCGGCGAGCGCCAATCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211380720|gb|FL215214.1|FL215214
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211383352|gb|FL215225.1|FL215225
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGWCGTCCGCHCGCAKAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211250619|gb|FL215182.1|FL215182
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGCGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211246155|gb|FL215155.1|FL215155
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211378070|gb|FL215201.1|FL215201
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211380714|gb|FL215208.1|FL215208
EST:     CGACATCCTCGGCGAGCGCCAATCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211243914|gb|FL215134.1|FL215134
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211378058|gb|FL215189.1|FL215189
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211243916|gb|FL215136.1|FL215136
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211246156|gb|FL215156.1|FL215156
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|21331562|gb|BQ486943.1|BQ486943
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCGTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211250620|gb|FL215183.1|FL215183
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211380710|gb|FL215204.1|FL215204
EST:     CGACATCCTCGGCGAGCGCCAATCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211248391|gb|FL215168.1|FL215168
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211378072|gb|FL215203.1|FL215203
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211243920|gb|FL215140.1|FL215140
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCACAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211250611|gb|FL215174.1|FL215174
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211243922|gb|FL215142.1|FL215142
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211380723|gb|FL215217.1|FL215217
EST:     CGACATCCTCGGCGAGCGCCAATCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTCGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211378069|gb|FL215200.1|FL215200
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|149083358|gb|EE172656.2|EE172656
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|149074901|gb|EE163349.2|EE163349
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211383347|gb|FL215220.1|FL215220
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211246147|gb|FL215147.1|FL215147
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211380721|gb|FL215215.1|FL215215
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCGTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|149000083|gb|EE037198.2|EE037198
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211248390|gb|FL215167.1|FL215167
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|60396669|gb|DN229537.1|DN229537
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211378066|gb|FL215197.1|FL215197
EST:     CGACATCCTCGGCGAGCGCCAATCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211250624|gb|FL215187.1|FL215187
EST:     CGACATCCTCGGCRAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211250622|gb|FL215185.1|FL215185
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211378065|gb|FL215196.1|FL215196
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211243915|gb|FL215135.1|FL215135
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211241685|gb|FL215127.1|FL215127
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211248395|gb|FL215172.1|FL215172
EST:     CGACATCCTCGGCGAGCGCCAATCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211243923|gb|FL215143.1|FL215143
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211250623|gb|FL215186.1|FL215186
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211243912|gb|FL215132.1|FL215132
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211248385|gb|FL215162.1|FL215162
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|71437844|gb|DR818894.1|DR818894
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211243910|gb|FL215130.1|FL215130
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211243921|gb|FL215141.1|FL215141
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211378067|gb|FL215198.1|FL215198
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|31557915|gb|CD527127.1|CD527127
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211250612|gb|FL215175.1|FL215175
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211250613|gb|FL215176.1|FL215176
EST:     CGACATCCTCGGCGAGCGCCAATCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211383348|gb|FL215221.1|FL215221
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211383351|gb|FL215224.1|FL215224
EST:     CGACATCCTCGGCGAGCGCCAATCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211378068|gb|FL215199.1|FL215199
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211241686|gb|FL215128.1|FL215128
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211241684|gb|FL215126.1|FL215126
EST:     CGACATCCTCGGCGAGCGCCAATCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211250614|gb|FL215177.1|FL215177
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211378062|gb|FL215193.1|FL215193
EST:     CGACATCCTCGGCGAGCGCCAATCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211243911|gb|FL215131.1|FL215131
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211380713|gb|FL215207.1|FL215207
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGAMGTCCGCACGCAGAACG                         TGATGGMTTGCGGGGCGGTGRCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211243913|gb|FL215133.1|FL215133
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
EST: gi|211248389|gb|FL215166.1|FL215166
EST:     CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACG                         TGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG
genomic: CGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 5 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 328

CCCCACTCCCACCTCGCCGCCGCAGCCATGGCGATCACAGCGCCAACTCCCGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG


Block sizes: 39 (upstream exon), 28 (downstream exon)
Score: 3

CCCCACTCCCACCTCGCCGCCGCAGCCATGGCGATCACAGCGCCAACTCCCGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG


Block sizes: 49 (upstream exon), 44 (downstream exon)
Score: 121

CCCCACTCCCACCTCGCCGCCGCAGCCATGGCGATCACAGCGCCAACTCCCGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 215

CCCCACTCCCACCTCGCCGCCGCAGCCATGGCGATCACAGCGCCAACTCCCGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG


Block sizes: 49 (upstream exon), 41 (downstream exon)
Score: 100

CCCCACTCCCACCTCGCCGCCGCAGCCATGGCGATCACAGCGCCAACTCCCGACATCCTCGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACGCAGAACGgtaaccgccg ... ttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagccatcttgccgcgcgctggtttaactaatggttttgcttgtttgatcgcagTGATGGCTTGCGGGGCGGTGGCCAACATCGTCAAATCCTCGCTCGGCCCCGTTGGTCTCGACAAG
                                        cttgttt  CT-rich tract
                       tttaactaat  TA-rich tract