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...cgacgataaattacatgtgatcttgttcgcagttcgtgcatatgtgcctatacggacctgacagtgcgaagcactcaaatacctttttttccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAG
species | Zea mays |
transcript | GRMZM2G038848_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGEST: gi|211345290|gb|FL126063.1|FL126063
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGEST: gi|211345286|gb|FL126059.1|FL126059
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGEST: gi|211345287|gb|FL126060.1|FL126060
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGEST: gi|148943028|gb|EC888078.2|EC888078
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGEST: gi|148946776|gb|EC892045.2|EC892045
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGEST: gi|211345285|gb|FL126058.1|FL126058
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGEST: gi|89757643|gb|DY687157.1|DY687157
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGEST: gi|148942779|gb|EC887806.2|EC887806
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGEST: gi|71429367|gb|DR810417.1|DR810417
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGEST: gi|30705270|gb|CD058727.1|CD058727
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGEST: gi|101390742|gb|EB817305.1|EB817305
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGEST: gi|91878697|gb|EB408654.1|EB408654
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: GACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGCGCTGGCTCCCCAG AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGEST: gi|148946555|gb|EC884293.2|EC884293
genomic: GACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCG-GTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGEST: gi|211345293|gb|FL126066.1|FL126066
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTSGGTGCGGTTGGCTCCCCAG AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGEST: gi|211345288|gb|FL126061.1|FL126061
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGEST: gi|78080160|gb|DV508572.1|DV508572
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGEST: gi|78079274|gb|DV507686.1|DV507686
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGEST: gi|74234671|gb|DT642585.1|DT642585
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGEST: gi|149074521|gb|EE162917.2|EE162917
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
EST: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAG AATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
genomic: CGACGCTCGGCGGCTGTGGGGCGCAGGCTTCAGTGCGGTTGGCTCCCCAGgtcagtgacg ... ccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAG
gcctatacggacctgacagtgcgaagcactcaaatacctttttttccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAG
acctgac putative branch site (score: 122)
tacctttttttccctg putative PPT
aaataccttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgacgataaattacatgtgatcttgttcgcagttcgtgcatatgtgcctatacggacctgacagtgcgaagcactcaaatacctttttttccctgtgcagAATGGAATCCTTGGATCTAATTCGAAGCCATTCGCGGGCATCATACTCAAGAAACCTCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - -catgtga
- - - - - - - - - - - - - - - - - -gtgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagcac