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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcatgatttttattcttttccttctatagaaagttagaaacaacccttccatgatttctctgttctctctgcgttcatttttgaatatgtagcgctagGCGTGGACGGAGCGGCGTCGTTCAGGTTCACCAACGCTTGCCAGCACCCGGTGTGGGTGGGCGCGCTCCACGGCGCCAGCTCGCCGCCGCTCGCAAGCTC

Basic information

species Zea mays
transcript GRMZM2G038846_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211397464|gb|FL141175.1|FL141175
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211535642|gb|FL141267.1|FL141267
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211538651|gb|FL141288.1|FL141288
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211526647|gb|FL141233.1|FL141233
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211532652|gb|FL141262.1|FL141262
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211523633|gb|FL141212.1|FL141212
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|149041334|gb|EE046972.2|EE046972
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|149099707|gb|EE185757.2|EE185757
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|148962401|gb|EE013249.2|EE013249
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211529636|gb|FL141239.1|FL141239
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|149090154|gb|EE179454.2|EE179454
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211092090|gb|FL141339.1|FL141339
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211094570|gb|FL141362.1|FL141362
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211089625|gb|FL141325.1|FL141325
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|148946215|gb|EC891512.2|EC891512
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211526641|gb|FL141227.1|FL141227
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211392219|gb|FL141149.1|FL141149
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAG                         C
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGgtgcggtgcg ... gtagcgctag-
EST: gi|211392219|gb|FL141149.1|FL141149
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAG                         C
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGgtgcggtgcg ... gtagcgctag-
EST: gi|211538644|gb|FL141281.1|FL141281
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211529638|gb|FL141241.1|FL141241
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211535647|gb|FL141272.1|FL141272
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211538655|gb|FL141292.1|FL141292
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211392217|gb|FL141147.1|FL141147
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|148962341|gb|EE013177.2|EE013177
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211092099|gb|FL141348.1|FL141348
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|149096661|gb|EE182428.2|EE182428
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211541675|gb|FL141308.1|FL141308
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211097046|gb|FL141376.1|FL141376
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|148958822|gb|EE010423.2|EE010423
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|149108684|gb|EE292909.2|EE292909
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|149085885|gb|EE175414.2|EE175414
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211529637|gb|FL141240.1|FL141240
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211526644|gb|FL141230.1|FL141230
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211538648|gb|FL141285.1|FL141285
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|148994796|gb|EE034243.2|EE034243
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211523628|gb|FL141207.1|FL141207
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAG                         GCGTGGACGGAGCGGCGTCGTTCAGGTTCACCAACGCTTGCCAGCACCCGG
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGgtgcggtgcg ... gtagcgctagGCGTGGACGGAGCGGCGTCGTTCAGGTTCACCAACGCTTGCCAGCACCCGG
EST: gi|211397470|gb|FL141181.1|FL141181
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|149105408|gb|EE290920.2|EE290920
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211089637|gb|FL141337.1|FL141337
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|148939841|gb|EC884547.2|EC884547
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211538650|gb|FL141287.1|FL141287
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAG                         GCGTGGACGGAGCGGCGTCGTTCAGGTTCACCAACGCTTGCCAGCACCCGG
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGgtgcggtgcg ... gtagcgctagGCGTGGACGGAGCGGCGTCGTTCAGGTTCACCAACGCTTGCCAGCACCCGG
EST: gi|148961571|gb|EE012329.2|EE012329
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|148930408|gb|EE284883.2|EE284883
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAG                         GCGTGGACGGAGCGGCGTCGTTCAGGTTCACCAACGCTTGCCAGCACCCGG
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGgtgcggtgcg ... gtagcgctagGCGTGGACGGAGCGGCGTCGTTCAGGTTCACCAACGCTTGCCAGCACCCGG
EST: gi|211397469|gb|FL141180.1|FL141180
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|148971524|gb|EE022227.2|EE022227
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211520630|gb|FL141194.1|FL141194
EST:     GATGCTCANTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211526635|gb|FL141221.1|FL141221
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211389590|gb|FL141143.1|FL141143
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211526642|gb|FL141228.1|FL141228
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211541672|gb|FL141305.1|FL141305
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211389588|gb|FL141141.1|FL141141
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211529645|gb|FL141248.1|FL141248
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211394850|gb|FL141169.1|FL141169
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211520633|gb|FL141197.1|FL141197
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|148966965|gb|EE018106.2|EE018106
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211394845|gb|FL141164.1|FL141164
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211099521|gb|FL141386.1|FL141386
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|149074643|gb|EE163057.2|EE163057
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211529634|gb|FL141237.1|FL141237
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211092097|gb|FL141346.1|FL141346
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211099522|gb|FL141387.1|FL141387
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211097053|gb|FL141383.1|FL141383
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211092104|gb|FL141353.1|FL141353
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211394843|gb|FL141162.1|FL141162
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211394846|gb|FL141165.1|FL141165
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|149090138|gb|EE179438.2|EE179438
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211392220|gb|FL141150.1|FL141150
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211094568|gb|FL141360.1|FL141360
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAG                         C
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGgtgcggtgcg ... gtagcgctag-
EST: gi|211094568|gb|FL141360.1|FL141360
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAG                         C
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGgtgcggtgcg ... gtagcgctag-
EST: gi|211087185|gb|FL141320.1|FL141320
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|148985341|gb|EE029648.2|EE029648
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|149055282|gb|EE156216.2|EE156216
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|148982015|gb|EE028065.2|EE028065
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211529635|gb|FL141238.1|FL141238
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|148947590|gb|EC893068.2|EC893068
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|149108878|gb|EE293019.2|EE293019
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211394853|gb|FL141172.1|FL141172
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAG                         C
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGgtgcggtgcg ... gtagcgctag-
EST: gi|211394853|gb|FL141172.1|FL141172
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAG                         C
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGgtgcggtgcg ... gtagcgctag-
EST: gi|148959760|gb|EC905653.2|EC905653
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211087176|gb|FL141311.1|FL141311
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211526634|gb|FL141220.1|FL141220
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|148993869|gb|EE033903.2|EE033903
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211535639|gb|FL141264.1|FL141264
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAG                         C
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGgtgcggtgcg ... gtagcgctag-
EST: gi|211535639|gb|FL141264.1|FL141264
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAG                         C
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGgtgcggtgcg ... gtagcgctag-
EST: gi|211397473|gb|FL141184.1|FL141184
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211092101|gb|FL141350.1|FL141350
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|149105332|gb|EE290825.2|EE290825
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211087184|gb|FL141319.1|FL141319
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211089629|gb|FL141329.1|FL141329
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|149090650|gb|EE179971.2|EE179971
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211535653|gb|FL141278.1|FL141278
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211392228|gb|FL141158.1|FL141158
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211094564|gb|FL141356.1|FL141356
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211394849|gb|FL141168.1|FL141168
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|149100628|gb|EE186716.2|EE186716
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|149055363|gb|EE156276.2|EE156276
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211541662|gb|FL141295.1|FL141295
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211532653|gb|FL141263.1|FL141263
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211535643|gb|FL141268.1|FL141268
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211089633|gb|FL141333.1|FL141333
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211094574|gb|FL141366.1|FL141366
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211389589|gb|FL141142.1|FL141142
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|149089086|gb|EE178257.2|EE178257
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|148985806|gb|EE029764.2|EE029764
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|149111711|gb|EE190859.2|EE190859
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|149049820|gb|EE048507.2|EE048507
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211089631|gb|FL141331.1|FL141331
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211397477|gb|FL141188.1|FL141188
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211526638|gb|FL141224.1|FL141224
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|148930808|gb|EC873173.2|EC873173
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211087175|gb|FL141310.1|FL141310
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211541669|gb|FL141302.1|FL141302
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211394840|gb|FL141159.1|FL141159
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211523631|gb|FL141210.1|FL141210
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211392215|gb|FL141145.1|FL141145
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|149083664|gb|EE173010.2|EE173010
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211523629|gb|FL141208.1|FL141208
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc
EST: gi|211541666|gb|FL141299.1|FL141299
EST:     GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGCGCTAG                    
genomic: GATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCT-----CGC-AGgtgcggtgcg ... gtagc

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 49 (upstream exon), 42 (downstream exon)
Score: 19

CACCTTCTTCTCCAACTCTCTGCCGGAGTCAATGGAGCTAGCAGGAACAGGATGCTCATTCCAGCCATTCTTTCGATTCTTCAGCTTATTCACCTCGCAGgtgcggtgcg ... gtagcgctagGCGTGGACGGAGCGGCGTCGTTCAGGTTCACCAACGCTTGCCAGCACCCGGTGTGGGTGGGCGCGCTCCACGGCGCCAGCTCGCCGCCGCTCGCAAGCTC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccttccatgatttctctgttctctctgcgttcatttttgaatatgtagcgctagGCGTGGACGGAGCGGCGTCGTTCAGGTTCACCAACGCTTGCCAGCACCCGGTGTGGGTGGGCGCGCTCCACGGCGCCAGCTCGCCGCCGCTCGCAAGCTC
                              ttcatttttgaatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttcatgatttttattcttttccttctatagaaagttagaaacaacccttccatgatttctctgttctctctgcgttcatttttgaatatgtagcgctagGCGTGGACGGAGCGGCGTCGTTCAGGTTCACCAACGCTTGCCAGCACCCGGTGTGGGTGGGCGCGCTCCACGGCGCCAGCTCGCCGCCGCTCGCAAGCTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- -catgatt
- - - - - - - - - - - - - -atagaaag
- - - - - - - - - - - - - - - - - - - - aacaacc
- - - - - - - - - - - - - - - - - - - - - - - - ttccatg