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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaccaaataggccctaatttatgtcgagcctgtacaatgtggattttttttgaacttctgcctggttatataagctaaaaaatggactcgtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGCATTCCGGTGTCCAACAGGTCGTTATTGACTCCTGTAACCTTGCCAGTTT

Basic information

species Zea mays
transcript GRMZM2G038791_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211385414|gb|FL420190.1|FL420190
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|76014853|gb|DT942023.1|DT942023
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211263544|gb|FL369199.1|FL369199
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211116188|gb|FL414274.1|FL414274
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGA-TGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211452034|gb|FL391255.1|FL391255
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGCGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211434346|gb|FL408461.1|FL408461
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|148941796|gb|EC886762.2|EC886762
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211054424|gb|FL403423.1|FL403423
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211214621|gb|FL385707.1|FL385707
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAA
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAA
EST: gi|211434262|gb|FL404594.1|FL404594
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTSTAAAAAGATTGATTCTMTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211153468|gb|FL403833.1|FL403833
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211027831|gb|FL421234.1|FL421234
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|71429936|gb|DR810986.1|DR810986
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211263862|gb|FL390542.1|FL390542
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211382027|gb|FL388794.1|FL388794
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211032752|gb|FL421264.1|FL421264
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211039333|gb|FL381586.1|FL381586
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|76914467|gb|DV165542.1|DV165542
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|76015091|gb|DT942261.1|DT942261
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|94476090|gb|EB705048.1|EB705048
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|78118884|gb|DV537268.1|DV537268
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGAAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211363353|gb|FL393789.1|FL393789
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|91052224|gb|EB162642.1|EB162642
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211288439|gb|FL410136.1|FL410136
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211535950|gb|FL381083.1|FL381083
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|78120522|gb|DV538906.1|DV538906
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211288221|gb|FL395058.1|FL395058
EST:     CGCGCAGCGGGGGCCTCCTGCACCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211528099|gb|FL426876.1|FL426876
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|71771273|gb|DR969210.1|DR969210
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|149077159|gb|EE165820.2|EE165820
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|74243300|gb|DT651214.1|DT651214
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211065807|gb|FL399353.1|FL399353
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211066796|gb|FL430459.1|FL430459
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|148965187|gb|EE015993.2|EE015993
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211461834|gb|FL417620.1|FL417620
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|101391941|gb|EB817900.1|EB817900
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211009203|gb|FL416027.1|FL416027
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211311593|gb|FL416728.1|FL416728
EST:     CGCGCAGCGGGGGCCTCCTGCACCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211127258|gb|FL371847.1|FL371847
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211451624|gb|FL374376.1|FL374376
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|31354058|gb|CD438415.1|CD438415
EST:     CTCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211140507|gb|FL400407.1|FL400407
EST:     CNCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|148931525|gb|EC874574.2|EC874574
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211169679|gb|FL404311.1|FL404311
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|211497336|gb|FL428227.1|FL428227
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
EST: gi|101393322|gb|EB818592.1|EB818592
EST:     CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTG                         AATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC
genomic: CGCGCAGCGGGGGCCTCCTGCGCCGCTCGCGCCCAGCCCCCGCCGCCGTGgtgagctcct ... gtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttgaacttctgcctggttatataagctaaaaaatggactcgtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGCATTCCGGTGTCCAACAGGTCGTTATTGACTCCTGTAACCTTGCCAGTTT
                            agctaaa  putative branch site (score: 3)
                     ttatataagctaaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttaccaaataggccctaatttatgtcgagcctgtacaatgtggattttttttgaacttctgcctggttatataagctaaaaaatggactcgtacgtgcagAATTGTAAAAAGATTGATTCTCTGAGGTCAATCAATGGAGCACCACCTTGCATTCCGGTGTCCAACAGGTCGTTATTGACTCCTGTAACCTTGCCAGTTT

- - - - - - - - - - - - - - gcctgta
- - - - - - - - - - - - - - - - - -caatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat