Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtattttccccttccattcgtttacagctcgatccccaaaactgagatgtggttggtggtagcgtctgattcgaatattttgttcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG

Basic information

species Zea mays
transcript GRMZM2G038606_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038606_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g15310.1 (Oryza sativa), 3'ss of exon 1
----gtgtgtattttccccttccattcgtttacagctcgatccccaaaactgagatgtggttggtggtagcgtctgattcgaatattttgttcttgt-gcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
    || | | | |     |  || ||  |  |  |||||||||||||      ||| ||  |        |||||||||     || |||| | || ||||||||| ||||||||||||||||||||||||||||| ||||||
gttcgtctctctctctatttctcaatctgtaccctctcgatccccaaatt---aatgcggccg-------tgtctgattctgtgtttgtgttgtggttgcagCTTCCGCTCTCGCTCCTCAAGACCGCCCAGGGGCATCCCATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211074698|gb|FL076203.1|FL076203
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211533726|gb|FL071650.1|FL071650
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCC-ATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211536731|gb|FL071660.1|FL071660
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|94474355|gb|EB703313.1|EB703313
EST:     CTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: CTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|5343007|gb|AI795312.1|AI795312
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|31358015|gb|CD442372.1|CD442372
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|78115517|gb|DV533905.1|DV533905
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211077444|gb|FL076220.1|FL076220
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|89252869|gb|DY624655.1|DY624655
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211077445|gb|FL076221.1|FL076221
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211077443|gb|FL076219.1|FL076219
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211077441|gb|FL076217.1|FL076217
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211536732|gb|FL071661.1|FL071661
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211533731|gb|FL071655.1|FL071655
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|32868742|gb|CF008424.1|CF008424
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211074699|gb|FL076204.1|FL076204
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211074704|gb|FL076209.1|FL076209
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211074701|gb|FL076206.1|FL076206
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211533729|gb|FL071653.1|FL071653
EST:     CCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: CCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211533732|gb|FL071656.1|FL071656
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211077437|gb|FL076213.1|FL076213
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|32804245|gb|CD956481.1|CD956481
EST:     GATCCTGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: GATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211077438|gb|FL076214.1|FL076214
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|78107776|gb|DV526194.1|DV526194
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|40333860|gb|CK367930.1|CK367930
EST:     CTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: CTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211077436|gb|FL076212.1|FL076212
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211533730|gb|FL071654.1|FL071654
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211074703|gb|FL076208.1|FL076208
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211536733|gb|FL071662.1|FL071662
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211533727|gb|FL071651.1|FL071651
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAAACCGCCCAGGGGCA-CCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211074702|gb|FL076207.1|FL076207
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211533728|gb|FL071652.1|FL071652
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211536730|gb|FL071659.1|FL071659
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211533733|gb|FL071657.1|FL071657
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211077440|gb|FL076216.1|FL076216
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGC
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGC
EST: gi|9952507|gb|BE639090.1|BE639090
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|76927712|gb|DV171333.1|DV171333
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|84970052|gb|DW468427.1|DW468427
EST:     CCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: CCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211077434|gb|FL076210.1|FL076210
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211074700|gb|FL076205.1|FL076205
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211077442|gb|FL076218.1|FL076218
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211533734|gb|FL071658.1|FL071658
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|211536735|gb|FL071664.1|FL071664
EST:     TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCCATG
genomic: TCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
EST: gi|78115516|gb|DV533904.1|DV533904
EST:     CCCCGGATCCCGTACAATATG                         CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
genomic: CCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 143

AATCTCCTCCCCCGCAGCCGCCGCCCGACCGTGCGCCAACGATACATCCTTCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG


Block sizes: 46 (upstream exon), 47 (downstream exon)
Score: 77

AATCTCCTCCCCCGCAGCCGCCGCCCGACCGTGCGCCAACGATACATCCTTCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG


Block sizes: 44 (upstream exon), 46 (downstream exon)
Score: 69

AATCTCCTCCCCCGCAGCCGCCGCCCGACCGTGCGCCAACGATACATCCTTCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG


Block sizes: 46 (upstream exon), 47 (downstream exon)
Score: 86

AATCTCCTCCCCCGCAGCCGCCGCCCGACCGTGCGCCAACGATACATCCTTCTCCCTCCTCCGATCCGGCCTTTTTGATCCCCGGATCCCGTACAATATGgtgtgtattt ... tcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaactgagatgtggttggtggtagcgtctgattcgaatattttgttcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG
                         gtctgat  putative branch site (score: 86)
                                       ttttgttctt  putative PPT
                                   aatattttgttctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgtgtattttccccttccattcgtttacagctcgatccccaaaactgagatgtggttggtggtagcgtctgattcgaatattttgttcttgtgcagCTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCCATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC