1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtcgaatgccgcttcattagcgcctaactatatccacctccacgcccgcaattttttttatatatatttctaatcaatactgctacctcggcctctgcagGTTGACCTTCGCGACAGGCACGCGTTGGTGGACATCTTCTCGTCGCACAG
species | Zea mays |
transcript | GRMZM2G038598_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGTTATGCTCTGCCGCCTCCTCTGCCTCTGCCTCTGCCCAGATCCACAG GTTGACCTTCGCGACAGGCACGCGTTGGTGGACATCTTCTCGTCGCACAGEST: gi|78085825|gb|DV514218.1|DV514218
genomic: TCGTTATGCTCTGCCGCCTCCTCTGCCTCTGCCTCTGCCCAGATCCACAGgtcgggtcaa ... gcctctgcagGTTGACCTTCGCGACAGGCACGCGTTGGTGGACATCTTCTCGTCGCACAG
EST: TCGTTATGCTCTGCCGCCTCCTCTGCCTCTGCCTCTGCCCAGATCCACAG GTTGACCTTCGCGACAGGCACGCGTTGGTGGACATCTTCTCGTCGCACAGEST: gi|211173419|gb|FK976325.1|FK976325
genomic: TCGTTATGCTCTGCCGCCTCCTCTGCCTCTGCCTCTGCCCAGATCCACAGgtcgggtcaa ... gcctctgcagGTTGACCTTCGCGACAGGCACGCGTTGGTGGACATCTTCTCGTCGCACAG
EST: TCGTTATGCTCTGCCGCCTCCTCTGCCTCTGCCTCTGCCCAGATCCACAG GTTGACCTTCGCGACAGGCACGCGTTGGTGGACATCTTCTCGTCGCACAGEST: gi|50324852|gb|CO519978.1|CO519978
genomic: TCGTTATGCTCTGCCGCCTCCTCTGCCTCTGCCTCTGCCCAGATCCACAGgtcgggtcaa ... gcctctgcagGTTGACCTTCGCGACAGGCACGCGTTGGTGGACATCTTCTCGTCGCACAG
EST: TCGTTATGCTCTGCCGCCTCCTCTGCCTCTGCCTCTGCCCAGATCCACAG GTTGACCTTCGCGACAGGCACGCGTTGGTGGACATCTTCTCGTCGCACAG
genomic: TCGTTATGCTCTGCCGCCTCCTCTGCCTCTGCCTCTGCCCAGATCCACAGgtcgggtcaa ... gcctctgcagGTTGACCTTCGCGACAGGCACGCGTTGGTGGACATCTTCTCGTCGCACAG
ccgcaattttttttatatatatttctaatcaatactgctacctcggcctctgcagGTTGACCTTCGCGACAGGCACGCGTTGGTGGACATCTTCTCGTCGCACAG
ttctaat putative branch site (score: 2)
cctctgc putative PPT
attttttttatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgaatgccgcttcattagcgcctaactatatccacctccacgcccgcaattttttttatatatatttctaatcaatactgctacctcggcctctgcagGTTGACCTTCGCGACAGGCACGCGTTGGTGGACATCTTCTCGTCGCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA