1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttcacaatgaatcctatctctgctcatcgccgagctctctccaccagtaacccaattacctgtcaggtttgacgaggacgattttgctatggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACGGAGCTGAGTTTGCCAAGAACAACAACCTGGAGGCCCTGTTCCATGTGG
species | Zea mays |
transcript | GRMZM2G038487_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAAGTGTACGCCGTGCTCAGAGACGACEST: gi|78104299|gb|DV522717.1|DV522717
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACEST: gi|211144702|gb|FL413099.1|FL413099
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACEST: gi|93012412|gb|EB637932.1|EB637932
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACEST: gi|211477142|gb|FL427782.1|FL427782
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACEST: gi|211151550|gb|FL386542.1|FL386542
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACEST: gi|148963856|gb|EE014962.2|EE014962
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACEST: gi|211323397|gb|FL381741.1|FL381741
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GTCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACEST: gi|33467307|gb|CF244356.1|CF244356
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACEST: gi|37421692|gb|CF648547.1|CF648547
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACEST: gi|91055890|gb|EB166308.1|EB166308
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACEST: gi|211386924|gb|FL369297.1|FL369297
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACEST: gi|71768332|gb|DR966269.1|DR966269
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACEST: gi|211006759|gb|FL429448.1|FL429448
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACEST: gi|211454292|gb|FL396775.1|FL396775
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACEST: gi|78113363|gb|DV531755.1|DV531755
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACEST: gi|211076904|gb|FL402121.1|FL402121
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACEST: gi|211347947|gb|FL254258.1|FL254258
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACEST: gi|211116917|gb|FL407739.1|FL407739
genomic: TTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACEST: gi|211279400|gb|FL429235.1|FL429235
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACEST: gi|211228027|gb|FL407502.1|FL407502
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACEST: gi|211048371|gb|FL399856.1|FL399856
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACEST: gi|148961499|gb|EE012250.2|EE012250
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
EST: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAG GGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
genomic: TGGCGCCGCAGCTGCTCATTAAGCCCTCCCTCACCTGTTTCTCCAGAAAGgtcggttctt ... ggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGAC
agtaacccaattacctgtcaggtttgacgaggacgattttgctatggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACGGAGCTGAGTTTGCCAAGAACAACAACCTGGAGGCCCTGTTCCATGTGG
aatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcacaatgaatcctatctctgctcatcgccgagctctctccaccagtaacccaattacctgtcaggtttgacgaggacgattttgctatggctgtgcagGGCGTTGGCCGCTATGGCGGAATCAAGGTGTACGCCGTGCTCAGAGACGACGGAGCTGAGTTTGCCAAGAACAACAACCTGGAGGCCCTGTTCCATGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG