1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agatcaaaattcagatggaatgttgaagctgtgcacttttattgttatagcctcttctgtgctaaatgctaacgaactaaatccttgtttaacaatgcagATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTGAGTGTGGTAACTACTCCTGGGCTGCTGAGTACCTGTACCAGTATCGTG
species | Zea mays |
transcript | GRMZM2G038313_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAG ATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTEST: gi|86467968|gb|DY234338.1|DY234338
genomic: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAGgtctgcttct ... aacaatgcagATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTT
EST: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAG ATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTEST: gi|76919397|gb|DV167695.1|DV167695
genomic: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAGgtctgcttct ... aacaatgcagATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTT
EST: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAG ATTGGTCCTGACCAGATTGAAGCTCTEST: gi|148933758|gb|EC877689.2|EC877689
genomic: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAGgtctgcttct ... aacaatgcagATTGGTCCTGACCAGATTGAAGCTCT
EST: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAG ATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTEST: gi|148943093|gb|EC888147.2|EC888147
genomic: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAGgtctgcttct ... aacaatgcagATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTT
EST: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAG ATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTEST: gi|71333152|gb|DR803610.1|DR803610
genomic: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAGgtctgcttct ... aacaatgcagATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTT
EST: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAG ATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTEST: gi|211179411|gb|FL363899.1|FL363899
genomic: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAGgtctgcttct ... aacaatgcagATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTT
EST: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAG ATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTEST: gi|67042197|gb|CO468452.1|CO468452
genomic: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAGgtctgcttct ... aacaatgcagATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTT
EST: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAG ATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTEST: gi|149075427|gb|EE163945.2|EE163945
genomic: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAGgtctgcttct ... aacaatgcagATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTT
EST: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAG ATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTEST: gi|71438188|gb|DR819238.1|DR819238
genomic: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAGgtctgcttct ... aacaatgcagATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTT
EST: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAG ATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTEST: gi|211277761|gb|FL330399.1|FL330399
genomic: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAGgtctgcttct ... aacaatgcagATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTT
EST: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAG ATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTEST: gi|211180554|gb|FL306734.1|FL306734
genomic: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAGgtctgcttct ... aacaatgcagATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTT
EST: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAG ATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTEST: gi|149070764|gb|EE159177.2|EE159177
genomic: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAGgtctgcttct ... aacaatgcagATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTT
EST: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAG ATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTEST: gi|148996096|gb|EE035357.2|EE035357
genomic: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAGgtctgcttct ... aacaatgcagATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTT
EST: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAG ATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTEST: gi|71429761|gb|DR810811.1|DR810811
genomic: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAGgtctgcttct ... aacaatgcagATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTT
EST: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAG ATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTEST: gi|149077453|gb|EE166147.2|EE166147
genomic: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAGgtctgcttct ... aacaatgcagATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTT
EST: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAG ATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTEST: gi|211193900|gb|FL366188.1|FL366188
genomic: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAGgtctgcttct ... aacaatgcagATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTT
EST: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAG ATTGGTCCTGACCAGATTGAAGCTCTGTATCAEST: gi|71318808|gb|DR796165.1|DR796165
genomic: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAGgtctgcttct ... aacaatgcagATTGGTCCTGACCAGATTGAAGCTCTGTATCA
EST: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAG ATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTT
genomic: TCAGGCCCGACAAACAGTACAACATCCACATGCTCCAGGAGAGATACCAGgtctgcttct ... aacaatgcagATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTT
tatagcctcttctgtgctaaatgctaacgaactaaatccttgtttaacaatgcagATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTGAGTGTGGTAACTACTCCTGGGCTGCTGAGTACCTGTACCAGTATCGTG
tttaacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatcaaaattcagatggaatgttgaagctgtgcacttttattgttatagcctcttctgtgctaaatgctaacgaactaaatccttgtttaacaatgcagATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTGAGTGTGGTAACTACTCCTGGGCTGCTGAGTACCTGTACCAGTATCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- atcaaaa
- - - - - - - - - - - - gaagctg
- - - - - - - - - - - - - - - -tgcactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgttt