1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agcttttcgcaggtttctccaaaatcggcatgctttgcttcgacggtgtgaagcgtgggtttggcactacgattgattggagattttcgtgggttttcagATCAAGGACATGGCGCTGAAGGCATCGGGCGCGTACCGGCACTGCAAGCCCTGCGCCGGTTCGTCCTCCCCGGCGGCGTCGCGGCGGCAGCAACCGTACT
species | Zea mays |
transcript | GRMZM2G037941_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGCGGCAACGCCCGGCACGAGGCAGGCCATCAGGGTGCTCACCGCCCAG ATCAAGGACATGGCGCTGAAGGCATCGGGCGCGTACCGGCACTGCAAGCCCEST: gi|211013108|gb|FL118029.1|FL118029
genomic: CGGCGGCAACGCCCGGCACGAGGCAGGCCATCAGGGTGCTCACCGCCCAGgttggttgcc ... gggttttcagATCAAGGACATGGCGCTGAAGGCATCGGGCGCGTACCGGCACTGCAAGCCC
EST: CGGCGGCAACGCCCGGCACGAGGCAGGCCATCAGGGTGCTCACCGCCCAG ATCAAGGACATGGCGCTGAAGGCATCGGGCGCGTACCGGCACTGCAAGCCCEST: gi|211013107|gb|FL118028.1|FL118028
genomic: CGGCGGCAACGCCCGGCACGAGGCAGGCCATCAGGGTGCTCACCGCCCAGgttggttgcc ... gggttttcagATCAAGGACATGGCGCTGAAGGCATCGGGCGCGTACCGGCACTGCAAGCCC
EST: CGGCGGCAACGCCCGGCACGAGGCAGGCCATCAGGGTGCTCACCGCCCAG ATCAAGGACAGTGGCGCTGAAGGCATCGGGGCGCGTACSGGCACTGCAAGCEST: gi|211013104|gb|FL118025.1|FL118025
genomic: CGGCGGCAACGCCCGGCACGAGGCAGGCCATCAGGGTGCTCACCGCCCAGgttggttgcc ... gggttttcagATCAAGGACA-TGGCGCTGAAGGCATCGGG-CGCGTACCGGCACTGCAAGC
EST: CGGCGGCAACGCCCGGCACGAGGCAGGCCATCAGGGTGCTCACCGCCCAG ATCAAGGACATGGCGCTGAAGGCATCGGGCGCGTACCGGCACTGCAAGCCCEST: gi|211013106|gb|FL118027.1|FL118027
genomic: CGGCGGCAACGCCCGGCACGAGGCAGGCCATCAGGGTGCTCACCGCCCAGgttggttgcc ... gggttttcagATCAAGGACATGGCGCTGAAGGCATCGGGCGCGTACCGGCACTGCAAGCCC
EST: CGGCGGCAACGCCCGGCACGAGGCAGGCCATCAGGGTGCTCACCGCCCAG ATCAAGGACATGGCGCTGAAGGCATCGGGCGCGTACCGGCACTGCAAGCCCEST: gi|89250748|gb|DY622534.1|DY622534
genomic: CGGCGGCAACGCCCGGCACGAGGCAGGCCATCAGGGTGCTCACCGCCCAGgttggttgcc ... gggttttcagATCAAGGACATGGCGCTGAAGGCATCGGGCGCGTACCGGCACTGCAAGCCC
EST: CGGCGGCAACGCCCGGCACGAGGCAGGCCATCAGGGTGCTCACCGCCCAG ATCAAGGACATGGCGCTGAAGGCATCGGGCGCGTACCGGCACTGCAAGCCCEST: gi|76282174|gb|DV021742.1|DV021742
genomic: CGGCGGCAACGCCCGGCACGAGGCAGGCCATCAGGGTGCTCACCGCCCAGgttggttgcc ... gggttttcagATCAAGGACATGGCGCTGAAGGCATCGGGCGCGTACCGGCACTGCAAGCCC
EST: CGGCGGCAACGCCCGGCACGAGGCAGGCCATCAGGGTGCTCACCGCCCAG ATCAAGGACATGGCGCTGAAGGCATCGGGCGCGTACCGGCACTGCAAGCCCEST: gi|148945529|gb|EC890777.2|EC890777
genomic: CGGCGGCAACGCCCGGCACGAGGCAGGCCATCAGGGTGCTCACCGCCCAGgttggttgcc ... gggttttcagATCAAGGACATGGCGCTGAAGGCATCGGGCGCGTACCGGCACTGCAAGCCC
EST: CGGCGGCAACGCCCGGCACGAGGCAGGCCATCAGGGTGCTCACCGCCCAG ATCAAGGACATGGCGCTGAAGGCATCGGGCGCGTACCGGCACTGCAAGCCC
genomic: CGGCGGCAACGCCCGGCACGAGGCAGGCCATCAGGGTGCTCACCGCCCAGgttggttgcc ... gggttttcagATCAAGGACATGGCGCTGAAGGCATCGGGCGCGTACCGGCACTGCAAGCCC
gtgtgaagcgtgggtttggcactacgattgattggagattttcgtgggttttcagATCAAGGACATGGCGCTGAAGGCATCGGGCGCGTACCGGCACTGCAAGCCCTGCGCCGGTTCGTCCTCCCCGGCGGCGTCGCGGCGGCAGCAACCGTACT
gattgat putative branch site (score: 58)
ttttc putative PPT
attgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcttttcgcaggtttctccaaaatcggcatgctttgcttcgacggtgtgaagcgtgggtttggcactacgattgattggagattttcgtgggttttcagATCAAGGACATGGCGCTGAAGGCATCGGGCGCGTACCGGCACTGCAAGCCCTGCGCCGGTTCGTCCTCCCCGGCGGCGTCGCGGCGGCAGCAACCGTACT
- - - - - - - - - - - - - ggcatgc
- - - - - - - - - - - - - - - - -tttgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcactac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgattg