1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagcctccgttctctttcagtttcagcgccccctcctaatgttggattggatttggagatgctaatgttcaggtatgatgaatccagAGCTGGGACCGGGTTGCTGTCCATGATGGCGGCGCGAGCTTTGGCAGCTGCTGGAGGTGAAGGTAGGGGAAGCGTGTCAGCATGCGAGTCCTACCTTCCA
species | Zea mays |
transcript | GRMZM2G037624_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCATTGACGCCACGGTAACGGACCCCACCTCTCGCGTCCTCGACATCGG AGCTGGGACCGGGTTGCTGTCCATGATGGCGGCGCGAGCTTTGGCAGCTGCEST: gi|76012269|gb|DT939439.1|DT939439
genomic: GCCATTGACGCCACGGTAACGGACCCCACCTCTCGCGTCCTCGACATCGGgtgagcctcc ... atgaatccagAGCTGGGACCGGGTTGCTGTCCATGATGGCGGCGCGAGCTTTGGCAGCTGC
EST: GCCATTGACGCCACGGTAACGGACCCCACCTCTCGCGTCCTCGACATCGG AGCTGGGACCGGGTTGCTGTCCATGATGGCGGCGCGAGCTTTGGCAGCTGCEST: gi|71450154|gb|DR831204.1|DR831204
genomic: GCCATTGACGCCACGGTAACGGACCCCACCTCTCGCGTCCTCGACATCGGgtgagcctcc ... atgaatccagAGCTGGGACCGGGTTGCTGTCCATGATGGCGGCGCGAGCTTTGGCAGCTGC
EST: GCCATTGACGCCACGGTAACGGACCCCACCTCTCGCGTCCTCGACATCGG AGCTGGGACCGGGTTGCTGTCCATGATGGCGGCGCGAGCTTTGGCAGCTGCEST: gi|31355523|gb|CD439880.1|CD439880
genomic: GCCATTGACGCCACGGTAACGGACCCCACCTCTCGCGTCCTCGACATCGGgtgagcctcc ... atgaatccagAGCTGGGACCGGGTTGCTGTCCATGATGGCGGCGCGAGCTTTGGCAGCTGC
EST: GCCATTGACGCCACGGTAACGGACCCCACCTCTCGCGTCCTCGACATCGG ATTTGGGACCGGGTTGCTGTCCATGATGGCGGCGCGAGCTTTGGCAGCTGC
genomic: GCCATTGACGCCACGGTAACGGACCCCACCTCTCGCGTCCTCGACATCGGgtgagcctcc ... atgaatccagAGCTGGGACCGGGTTGCTGTCCATGATGGCGGCGCGAGCTTTGGCAGCTGC
ctcctaatgttggattggatttggagatgctaatgttcaggtatgatgaatccagAGCTGGGACCGGGTTGCTGTCCATGATGGCGGCGCGAGCTTTGGCAGCTGCTGGAGGTGAAGGTAGGGGAAGCGTGTCAGCATGCGAGTCCTACCTTCCA
tgctaat putative branch site (score: 32)
taatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcctccgttctctttcagtttcagcgccccctcctaatgttggattggatttggagatgctaatgttcaggtatgatgaatccagAGCTGGGACCGGGTTGCTGTCCATGATGGCGGCGCGAGCTTTGGCAGCTGCTGGAGGTGAAGGTAGGGGAAGCGTGTCAGCATGCGAGTCCTACCTTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG