Sequence
atgc intronic sequence ATGC exonic sequence...gatatagttctacttttctgagttatgttcgtttttaaatgttgaattcttgaaagtaactgctgctgatccaatgtataatttctttcttcctgcttagACAAATCAAGATCACAGGGTGGACCAGAATCTAAGAAGGACCTGATTATACATAGGGATGGGAATAGTCAAAATATTGCAGCACATACTTTCACTTTTCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G037585_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g71000.1 (Oryza sativa), 3'ss of exon 1
gatat-agttctacttttctgagttatgttcgtttttaa-atgttgaattcttgaaagtaactgctgctgatccaatgtataatttctttcttcctgcttagACAAATCAAGATCACAGGGTGGACCAGAATCTAAGAAGGACCTGATTATACATAGGGATGGGAATAGTCAAAATATTGCAGCACATACTTTCACTTTTCG
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gataagagtgttaatgctcagaggatagcacacaaccattactctgcccctcaaaaagaaaaaagaactgatt--actaactctacaacattttcttcttagATAAATCGAGATCACATGGTGGATTAGACTCTAAGAAGGACGTTGTCATCCAAAGAGATGGGAACAACCAAAATATTGCTGCACAGACGTTCACTTTTCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|148946362|gb|EC891668.2|EC891668EST: CGCCGGCAAAGACGTCCCGCCGGATCGCGCGGTGGTCCGCGTCGGATCAG ACAAATCAAGATCACAGGGTGGACCAGAATCTAAGAAGGACCTGATTATAC
genomic: CGCCGGCAAAGACGTCCCGCCGGATCGCGCGGTGGTCCGCGTCGGATCAGgtacggtacg ... tcctgcttagACAAATCAAGATCACAGGGTGGACCAGAATCTAAGAAGGACCTGATTATAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attcttgaaagtaactgctgctgatccaatgtataatttctttcttcctgcttagACAAATCAAGATCACAGGGTGGACCAGAATCTAAGAAGGACCTGATTATACATAGGGATGGGAATAGTCAAAATATTGCAGCACATACTTTCACTTTTCG
tttctttcttcctgct CT-rich tract
aatgtataatttcttt TA-rich tract