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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgtcatcagaggcggcaacggatatatcagaatgatttgttcatccagatgaaatgttacttttctgtttatttccttcggcttttttgctcgcgcatgtgcctagactgacgttgtcctctctgtgccttcagCTCATTCACTTGCCCGCAAATCCTTCTCATCTGGGGAAACTTTGTGGCCTTCTACATGATCAACTTAATACTCAGTACCGTCCCAAGTCTCCAACTGTAC

Basic information

species Zea mays
transcript GRMZM2G037335_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037335_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g28460.1 (Oryza sativa), 3'ss of exon 21
gtaagttgtcatcagaggcggcaacggatatatcagaatgatttgttcatccagatgaaatgttacttttctgtttatttccttcggcttttttgctcgcgcatgtgcctagactgacgttgtcctctctgtgccttcagCTCATTCACTTGCCCGCAAATCCTTCTCATCTGGGGAAACTTTGTGGCCTTCTACATGATCAACTTAATACTCAGTACCGTCCCAAGTCTCCAACTGTAC
                                                           | ||| ||     ||  | ||| |  || ||    | | | | ||        |||||  |  || | |  |   |||||||||||||||||  ||||||||| ||||||| |||||||||||| | |||||||||||||||||||||||| ||||| | || ||||  |||||| |||| 
---------------------------------------------------------gtaagtt-ctcactcgtgcacttcatgaggattg---gattgtgaatc-------actgaaatcatctttt--gcttcttcagCTCATTCACTTATCCGCAAATCATTCTCATATGGGGAAACTTTATCGCCTTCTACATGATCAACTTAATAGTCAGTGCGGTACCAACACTCCAAATGTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4681093|gb|AI629763.1|AI629763
EST:     TGTCCGGTTGCATTTGGTTACAGGCTTTTGTTGTGACAA-GGNATACAAA                         CTCATTCACTTGCCCGCAAATCCTTCTCATCTGGGGAAACTTTGTGGCCT
genomic: TGTCCGGTTGCATTTGGTTACAGGCTTTTGTTGTGACAATGG-ATACAAAgtaagttgtc ... gtgccttcagCTCATTCACTTGCCCGCAAATCCTTCTCATCTGGGGAAACTTTGTGGCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcttttttgctcgcgcatgtgcctagactgacgttgtcctctctgtgccttcagCTCATTCACTTGCCCGCAAATCCTTCTCATCTGGGGAAACTTTGTGGCCTTCTACATGATCAACTTAATACTCAGTACCGTCCCAAGTCTCCAACTGTAC
                          gactgac  putative branch site (score: 2)
                                     tcctctctgtgccttc  putative PPT