Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaagctactagcctagccagtgacgacgcataacgtacaatcgtacatgtctttttctactgtgcatgcaatgatatatatatatatatacaaacacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGAGCGGTTCAAGGAGTCGGAGGTGTACCACTGCCGGTGGGCCATGCTGGCC

Basic information

species Zea mays
transcript GRMZM2G036880_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036880_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g21590.1 (Oryza sativa), 3'ss of exon 1
gtaagcaagctactagcctagccagtgacgacgcataacgtacaatcgtacatgtctttttctactgtgcatgcaatgatatatatatatatatacaaacacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGAGCGGTTCAAGGAGTCGGAGGTGTACCACTGCCGGTGGGCCATGCTGGCC
    | |||| || ||| |   |   |||||||       | |    |     |||  |  | |  | |      |  |       || |    |      |   |||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
----gtaagc-acaagcgt--tcgacgacgacgacacgtcttcgccggcgtgcgtccgtggcgagcgagagactgacaaagctaggatttgc-catgcgtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGAGCGGTTCAAGGAGTCGGAGGTGTACCACTGCCGGTGGGCCATGCTCGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211276626|gb|FL022963.1|FL022963
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211274799|gb|FL022940.1|FL022940
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211278421|gb|FL022968.1|FL022968
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211278423|gb|FL022970.1|FL022970
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211276620|gb|FL022957.1|FL022957
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|94474264|gb|EB703222.1|EB703222
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211276624|gb|FL022961.1|FL022961
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211276625|gb|FL022962.1|FL022962
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|93281043|gb|EB673307.1|EB673307
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211009379|gb|FL077023.1|FL077023
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211278430|gb|FL022977.1|FL022977
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211276630|gb|FL022967.1|FL022967
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211273000|gb|FL022938.1|FL022938
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211276619|gb|FL022956.1|FL022956
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211280225|gb|FL022983.1|FL022983
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|50337457|gb|CO532583.1|CO532583
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211274805|gb|FL022946.1|FL022946
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGG-CCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211274804|gb|FL022945.1|FL022945
EST:     TGGATGCCCGGGCAGCCCCGTCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211276618|gb|FL022955.1|FL022955
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211272999|gb|FL022937.1|FL022937
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211274809|gb|FL022950.1|FL022950
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211278431|gb|FL022978.1|FL022978
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211276622|gb|FL022959.1|FL022959
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211276621|gb|FL022958.1|FL022958
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211272998|gb|FL022936.1|FL022936
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211274801|gb|FL022942.1|FL022942
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211278428|gb|FL022975.1|FL022975
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211276628|gb|FL022965.1|FL022965
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|71770486|gb|DR968423.1|DR968423
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211278429|gb|FL022976.1|FL022976
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211278427|gb|FL022974.1|FL022974
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211276623|gb|FL022960.1|FL022960
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|149094759|gb|EE180317.2|EE180317
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGCCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211274803|gb|FL022944.1|FL022944
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211278435|gb|FL022982.1|FL022982
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
EST: gi|211278424|gb|FL022971.1|FL022971
EST:     TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGG                         TGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA
genomic: TGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 29 (upstream exon), 40 (downstream exon)
Score: 2

CGTTCTGCGCCCACGCCACCACCTCCGGCCGCGTCACCATGTCCGCGGAGTGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGAGCGGTTCAAGGAGTCGGAGGTGTACCACTGCCGGTGGGCCATGCTGGCC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 167

CGTTCTGCGCCCACGCCACCACCTCCGGCCGCGTCACCATGTCCGCGGAGTGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGAGCGGTTCAAGGAGTCGGAGGTGTACCACTGCCGGTGGGCCATGCTGGCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 79

CGTTCTGCGCCCACGCCACCACCTCCGGCCGCGTCACCATGTCCGCGGAGTGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagc ... acacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGAGCGGTTCAAGGAGTCGGAGGTGTACCACTGCCGGTGGGCCATGCTGGCC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctttttctactgtgcatgcaatgatatatatatatatatacaaacacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGAGCGGTTCAAGGAGTCGGAGGTGTACCACTGCCGGTGGGCCATGCTGGCC
                 atgcaatgatatatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagcaagctactagcctagccagtgacgacgcataacgtacaatcgtacatgtctttttctactgtgcatgcaatgatatatatatatatatacaaacacacacagTGACTTCGGCTTCGACCCCCTGGGCCTGGCCACGGTGCCGGAGAACTTCGAGCGGTTCAAGGAGTCGGAGGTGTACCACTGCCGGTGGGCCATGCTGGCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG