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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgacttccctagtgcaccaccatgtttattctatcttaaaataaggatgccaaaagagtgtactctaacattcaaggctcttcttgaaattggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCTATGGTGAATCTCATGGGGGTGGTGTTGGTTGTGTTATCAGTGGTTGTCC

Basic information

species Zea mays
transcript GRMZM2G036861_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036861_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g14990.1 (Oryza sativa), 3'ss of exon 1
---tgacttccctagtgcaccaccatg--tttattctatcttaaaataaggatgccaaaagagtgtactctaacattcaaggctcttcttgaaattggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCTATGGTGAATCTCATGGGGGTGGTGTTGGTTGTGTTATCAGTGGTTGTCC
    || |     | |   | ||  ||  ||  || | |  ||  | ||||||| | ||||    || |  ||        | |  || ||||||| ||  |||||||||||||| |||| |||    ||||| |||||||| ||||||||||| ||||| || |||||||| || ||||||||||| || |||||||| || ||
aatagagtatttaaatctgctactttgcattacttttgttctattagaaggatggcgaaaggacttaattaaatcc-----gttgctcctgaaatttgaaaacagAGGTGAAGGCGTCTGCAAATGTATTTGGGAACTACTTCCAGGTTGCAACTTATGGAGAGTCTCATGGAGGCGGTGTTGGTTGCGTAATCAGTGGATGCCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211106359|gb|FL258168.1|FL258168
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|148952455|gb|EC898280.2|EC898280
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|211106356|gb|FL258165.1|FL258165
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGTTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|148950436|gb|EC896004.2|EC896004
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|71442819|gb|DR823869.1|DR823869
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTGCTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149088416|gb|EE177517.2|EE177517
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149096924|gb|EE182722.2|EE182722
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|211106357|gb|FL258166.1|FL258166
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149088025|gb|EE177228.2|EE177228
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149089246|gb|EE178450.2|EE178450
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149106625|gb|EE188518.2|EE188518
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|148950790|gb|EC896395.2|EC896395
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|211106352|gb|FL258161.1|FL258161
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGTTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACYACYTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|148951094|gb|EC896759.2|EC896759
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149111173|gb|EE294669.2|EE294669
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCAATGCTCGCCTAG                         AGGTGAAGGGATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCC
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACC-
EST: gi|211106358|gb|FL258167.1|FL258167
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149084565|gb|EE174034.2|EE174034
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|76281790|gb|DV021358.1|DV021358
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149067437|gb|EE287007.2|EE287007
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|148936477|gb|EC880584.2|EC880584
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149098825|gb|EE184838.2|EE184838
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|211106354|gb|FL258163.1|FL258163
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAAMACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|76934911|gb|DV174083.1|DV174083
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|211106355|gb|FL258164.1|FL258164
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGTTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|211106349|gb|FL258158.1|FL258158
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|148957149|gb|EC903140.2|EC903140
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|211106350|gb|FL258159.1|FL258159
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149071022|gb|EE159425.2|EE159425
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|211106353|gb|FL258162.1|FL258162
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
EST: gi|149036977|gb|EE155215.2|EE155215
EST:     CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAG                         AGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT
genomic: CTCCTCCTCCCTCCGCTTCGCCGTGCACCGCTGCCGCACTGCTCGCCTAGgtccgtccag ... tggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgccaaaagagtgtactctaacattcaaggctcttcttgaaattggatgacagAGGTGAAGGCATCTGGAAACACGTTTGGAAACTACTTTCAGGTTGCAACCTATGGTGAATCTCATGGGGGTGGTGTTGGTTGTGTTATCAGTGGTTGTCC
                 ctctaac  putative branch site (score: 2)
                                      ttgaaatt  TA-rich tract