1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
gtaacccgctccatcccccgtttccccatgtcaatgattttttgtttgcgtaatgtaatataataaaacataaatactagcttagtttgatttttcgagtcgtttgattccatttcagTTGGAAGAGAATAGCCGTCTCAAGGAAGAATTGATGAGGAAAACACAACAGCTACAGAGGATG
species | Zea mays |
transcript | GRMZM2G036206_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAGCGTCATGCGCGCCGTAGAGGGCGCCGACGCCACCATCCGCACCCAG TTGGAAGAGAATAGCCGTCTCAAGGAAGAATTGATGAGGAAAACACAACAGEST: gi|71324470|gb|DR798936.1|DR798936
genomic: TCAGCGTCATGCGCGCCGTAGAGGGCGCCGACGCCACCATCCGCACCCAGgtaacccgct ... tccatttcagTTGGAAGAGAATAGCCGTCTCAAGGAAGAATTGATGAGGAAAACACAACAG
EST: TCAGCGTCATGCGCGCCGTAGAGGGCGCCGACGCCACCATCCGCACCCAG TTGGAAGAGAATAGCCGTCTCAAGGAAGAATTGATGAGGAAAACACAACAG
genomic: TCAGCGTCATGCGCGCCGTAGAGGGCGCCGACGCCACCATCCGCACCCAGgtaacccgct ... tccatttcagTTGGAAGAGAATAGCCGTCTCAAGGAAGAATTGATGAGGAAAACACAACAG
taaaacataaatactagcttagtttgatttttcgagtcgtttgattccatttcagTTGGAAGAGAATAGCCGTCTCAAGGAAGAATTGATGAGGAAAACACAACAGCTACAGAGGATG
gtttgat putative branch site (score: 25)
ttccatttc CT-rich tract
ttagtttgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacccgctccatcccccgtttccccatgtcaatgattttttgtttgcgtaatgtaatataataaaacataaatactagcttagtttgatttttcgagtcgtttgattccatttcagTTGGAAGAGAATAGCCGTCTCAAGGAAGAATTGATGAGGAAAACACAACAGCTACAGAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG