1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcagatgcatacatgtcattggtgtcaatatgctatttatcgtcgtagcaaattgattgttagttttcacttacactaataggcactgtacatttttcagGGTTGCACCAACTGTAGATGCTGTTCTTTTGTCACATCCTGACATGATGCATCTAGGAGCTTTGCCTTACGCTATGAAACACCTTGGGCTGTCTGCACCA
species | Zea mays |
transcript | GRMZM2G036050_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCGGATGGACCGACCTCTGCGATACCTCGCAACTTCAACCCCTCGCAAA GGTTGCACCAACTGTAGATGCTGTTCTTTTGTCACATCCTGACATGATGCAEST: gi|71765703|gb|DR963640.1|DR963640
genomic: TGCGGATGGACCGACCTCTGCGATACCTCGCAACTTCAACCCCTCGCAAAgtacacatct ... catttttcagGGTTGCACCAACTGTAGATGCTGTTCTTTTGTCACATCCTGACATGATGCA
EST: TGCGGATGGACCGACCTCTGCGATACCTCGCAACTTCAACCCCTCGCAAA GGTTGCACCAACTGTAGATGCTGTTCTTTTGTCACATCCTGACATGATGCAEST: gi|211178128|gb|FL062329.1|FL062329
genomic: TGCGGATGGACCGACCTCTGCGATACCTCGCAACTTCAACCCCTCGCAAAgtacacatct ... catttttcagGGTTGCACCAACTGTAGATGCTGTTCTTTTGTCACATCCTGACATGATGCA
EST: TGCGGATGGACCGACCTCTGCGATACCTCGCAACTTCAACCCCTCGCAAA GGTTGCACCAACTGTAGATGCTGTTCTTTTGTCACATCCTGACATGATGCAEST: gi|149005531|gb|EE040090.2|EE040090
genomic: TGCGGATGGACCGACCTCTGCGATACCTCGCAACTTCAACCCCTCGCAAAgtacacatct ... catttttcagGGTTGCACCAACTGTAGATGCTGTTCTTTTGTCACATCCTGACATGATGCA
EST: TGCGGATGGACCGACCTCTGCGATACCTCGCAACTTCAACCCCTCGCAAA GGTTGCACCAACTGTAGATGCTGTTCTTTTGTCACATCCTGACATGATGCA
genomic: TGCGGATGGACCGACCTCTGCGATACCTCGCAACTTCAACCCCTCGCAAAgtacacatct ... catttttcagGGTTGCACCAACTGTAGATGCTGTTCTTTTGTCACATCCTGACATGATGCA
tagcaaattgattgttagttttcacttacactaataggcactgtacatttttcagGGTTGCACCAACTGTAGATGCTGTTCTTTTGTCACATCCTGACATGATGCATCTAGGAGCTTTGCCTTACGCTATGAAACACCTTGGGCTGTCTGCACCA
cactaat putative branch site (score: 2)
catttttc putative PPT
tacattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagatgcatacatgtcattggtgtcaatatgctatttatcgtcgtagcaaattgattgttagttttcacttacactaataggcactgtacatttttcagGGTTGCACCAACTGTAGATGCTGTTCTTTTGTCACATCCTGACATGATGCATCTAGGAGCTTTGCCTTACGCTATGAAACACCTTGGGCTGTCTGCACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT