1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attttgaaactttatgtaccaagtgtaagtgcttttgataatgtggcgtttctactcttgaaccctagaaaattaaacacatttggttacattcttgcagAAGAACAAACGGACCCCTACAAAATCCCAACAAAGCATAACATAAGGATGGCCATGTATTGGCTTGTGCAAGGTTGTCAACCTGGAGATTCATTGGTGTT
species | Zea mays |
transcript | GRMZM2G035928_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTCATGACGCGCTTCAACTTCCCCGACGACTCCATCATCATGCTCAACG AAGAACAAACGGACCCCTACAAAATCCCAACAAAGCATAACATAAGGATGGEST: gi|93016582|gb|EB642102.1|EB642102
genomic: GCTCATGACGCGCTTCAACTTCCCCGACGACTCCATCATCATGCTCAACGgtcggtagac ... attcttgcagAAGAACAAACGGACCCCTACAAAATCCCAACAAAGCATAACATAAGGATGG
EST: CTCCATCATCATGCTCAACG AAGAACAAACGGACCCCTACAAAATCCCAACAAAGCATAACATAAGGATGG
genomic: CTCCATCATCATGCTCAACGgtcggtagac ... attcttgcagAAGAACAAACGGACCCCTACAAAATCCCAACAAAGCATAACATAAGGATGG
gcgtttctactcttgaaccctagaaaattaaacacatttggttacattcttgcagAAGAACAAACGGACCCCTACAAAATCCCAACAAAGCATAACATAAGGATGGCCATGTATTGGCTTGTGCAAGGTTGTCAACCTGGAGATTCATTGGTGTT
cattctt CT-rich tract
aaaattaaacacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttgaaactttatgtaccaagtgtaagtgcttttgataatgtggcgtttctactcttgaaccctagaaaattaaacacatttggttacattcttgcagAAGAACAAACGGACCCCTACAAAATCCCAACAAAGCATAACATAAGGATGGCCATGTATTGGCTTGTGCAAGGTTGTCAACCTGGAGATTCATTGGTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - tgtacca
- - - - - - - - - - - - - - - gcttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaca