1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cacatagtgtatttctgcacgatattagctcgtagatatgcttaaaattgttcgattttgttgtattgactagtgcgctggcatggcttatatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATTTCGGTACTCTAAAAG
species | Zea mays |
transcript | GRMZM2G034975_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|211121478|gb|FL137087.1|FL137087
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCCAGCAEST: gi|211120700|gb|FL137078.1|FL137078
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGC-AGCA
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGGAGCACGATGCAGCATEST: gi|211121474|gb|FL137083.1|FL137083
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|211120704|gb|FL137082.1|FL137082
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|211121477|gb|FL137086.1|FL137086
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|86472486|gb|DY238856.1|DY238856
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|211120703|gb|FL137081.1|FL137081
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CC-CC--TCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|76910325|gb|DV163808.1|DV163808
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|211121484|gb|FL137093.1|FL137093
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|211120702|gb|FL137080.1|FL137080
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|211121483|gb|FL137092.1|FL137092
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|76010385|gb|DT937555.1|DT937555
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|78079427|gb|DV507839.1|DV507839
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|94476849|gb|EB705807.1|EB705807
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|211121481|gb|FL137090.1|FL137090
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|71326147|gb|DR799760.1|DR799760
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|211121482|gb|FL137091.1|FL137091
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|71314223|gb|DR793729.1|DR793729
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|211121485|gb|FL137094.1|FL137094
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|78082089|gb|DV510501.1|DV510501
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|50325253|gb|CO520379.1|CO520379
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|76933226|gb|DV173377.1|DV173377
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|50332229|gb|CO527355.1|CO527355
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|211121486|gb|FL137095.1|FL137095
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATEST: gi|211121487|gb|FL137096.1|FL137096
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
EST: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAG TTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
genomic: CCGCCCCTCCTCGCTGTCGCTTCGGCTCCTTCTCTCACTCCTGTTTCAAGgcaattcctc ... tatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCAT
aattgttcgattttgttgtattgactagtgcgctggcatggcttatatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATTTCGGTACTCTAAAAG
tattgac putative branch site (score: 2)
ttatatatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacatagtgtatttctgcacgatattagctcgtagatatgcttaaaattgttcgattttgttgtattgactagtgcgctggcatggcttatatatctcagTTTGGGAGGTCATTTCCAGTTCAGAGAGTCAATGGAAGCACGATGCAGCATTTCGGTACTCTAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - -tctgcac
- - - - - - - - - - - - - - - - - - - tgcttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatggc