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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acccacatagcttgacaagaaatgttttctacggtattttcaagctgtttctatcgattgaactaaaagtgtggttgacgatagcttccgtcttttctagGTGTTTTTACTGAAGGGGAGATTCATATTTGGTCCTGATGCAAGATCCTTGTTTGTCACCATGTTCCTTATTGTTGCGCCAGTATCAATCTTCTGTCCAT

Basic information

species Zea mays
transcript GRMZM2G034833_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034833_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g70100.1 (Oryza sativa), 3'ss of exon 1
acccacatagcttgacaagaaatgttttctacggtattttcaagctgtttctatcgatt---gaacta--aaagtgtggttgacg---atagcttccg--tcttttctagGTGTTTTTACTGAAGGGGAGATTCATATTTGGTCCTGATGCAAGATCCTTGTTTGTCACCATGTTCCTTATTGTTGCGCCAGTATCAATCTTCTGTCCAT
         ||| ||      ||   |  || |  || |||||     ||||    |||   ||| ||  || ||||| |||  |   |||||||  |  ||||||  |||||||| | ||  ||||||| || |||||||| || ||||||||||||||||  |||||||||||||| ||  | |||||||  |||||||| |||   |
---------gctggagtgatgatagctg-tatgagatcttcaaatcacttctgcgaatttaagaagtaggaaggtgtgattgcagcttatagcttttgtttctttttcagGTGTTTGTTCTTCAGGGGAGGTTTATATTTGGACCCGATGCAAGATCCTTGTACGTCACCATGTTCCTCATCATCGCGCCAGCGTCAATCTTTTGTTTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttctatcgattgaactaaaagtgtggttgacgatagcttccgtcttttctagGTGTTTTTACTGAAGGGGAGATTCATATTTGGTCCTGATGCAAGATCCTTGTTTGTCACCATGTTCCTTATTGTTGCGCCAGTATCAATCTTCTGTCCAT
                                       cttccgtcttttct  CT-rich tract
               aactaaaa  TA-rich tract