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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctctcgtatttaccgctgatggcctctccgattcgcatgcgtgggtcttaccgtgtgtcgtatcattttgtcgctgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC

Basic information

species Zea mays
transcript GRMZM2G034794_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 1
---------------------gtgagctctcgtatttaccgctgatggcctct--ccgattcgcatgcgtgggtcttaccgtgtgtcgtatcattttgtcgctgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC
                     |    |   | |   |  ||      |  ||   ||  | | | | | |   |||     |  ||| |  | |  | | |||||| ||||||||||||||||||||| |||||||||||| ||||||||||||| || |||||| ||||||||||||||||||| ||||||||||||||||||||||||||
gtgagctcctcctccgacgccgcctccctccatcactctcgtctccagtttcccacccctccacctccatctctctcctgatccgtcct-ccgtcgttttgctgtg-cacagGTGCGTACAAGTACGTGTCGGAGCTATGGAGGAGGAAGCAGTCGGACGTGATGAGGTTCGTGCAGCGCGTGCGGTGCTGGGAGTACAGGCAGCAGCCGGC

upper sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 1
gtgagctctcgtatttaccgctgatgg-cctctccga--ttcgcatgcgtgggtcttaccgtgtgtcgtatcattttgtcgctgt--ggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC
||||||||       | |  |   ||  ||||  |||  | | | | | |   || |  | | ||  |   |   || | ||||   ||  |||| |||||||||||||| |||||||||||| ||||||||||||| || |||||| |||||||||||||||||||||||||||||||| | |||||||||||
gtgagctcctcctcctcctccgcctgttcctcgtcgacctccccctacatctctcctctcttctgatgcgcccggtttttgctgcgaggtgcagGGGCGTACAAGTACGTGTCGGAGCTATGGAGGAGGAAGCAGTCGGACGTGATGAGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACCGCCAGCAGCCGGC

upper sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA17G15230.1 (Glycine max), 3'ss of exon 1
--gtgagctctcgtatttaccgctgatggcctctccgat-tcgcatgcgtg--ggtcttaccgtgtgtcgtatcattt-tgtcgct----gtggca-cagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC
   |||  |||  || |||     | ||  || ||     | ||||   ||    |||       |   | || |||| ||| | |    || |||  |||||| |||||||| || |||||||||||||| | ||||||||| ||||| ||| | ||| ||||||| ||| | |||||||||||  | ||||| ||  |
tgctgatttctattagttatgctggttgagctttctatcatagcatttttgttattctagtgaaattaggcattatttgtgttggtttatgttgcaatagGTGCCTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTATGAGATTCTTGCAGCGGGTGAGGTGCTGGGAGTATCGCCAGCAACCTTC

upper sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA01G41620.1 (Glycine max), 3'ss of exon 1
--gtg-agctctcgtatttaccgctgatggcctctccgattcgcatgc-gtgggtcttaccg-tgtgtcgtatcattt-tgtcgctgtggc-----acagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC
   |  |||| | |  | | | | ||      | |  | | |   ||  |   || | |  | |    ||| |  ||| ||| | ||||       | |||||| |||||||| || || ||||||||||| | ||||||||| ||||| ||||| ||| ||||||| ||| | ||||||||||| |||||||| ||  |
atatatagcttttggttattctgatggaattatgtgtggtacctgtgttggaagtgtaattgataaaacgtgttgtttatgttggtgtgattggcaatagGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAGCAGTCTGATGTCATGCGCTTCTTGCAGCGGGTGAGGTGCTGGGAGTATAGGCAGCAACCTTC

upper sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA05G04870.1 (Glycine max), 3'ss of exon 1
------gtgagctctcgtatttaccgctgatggcctctccgat-tcgcatgcgtgggtcttaccgtgtgtcgtatcattttgtcgc----tgtggca-cagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC
       |    |  | | ||| |   | | |     |  |   | |  ||  | ||  | |  |    | | || ||||| | |     ||| |||  |||||| |||||||| || |||||||||||||| | ||||||||| ||||| ||| | ||| ||||||| ||| | |||||||||||| | ||||| ||  |
gcctttctttcatagcatttttgctattcaagtgaaattaggcattgtttgttttggaatgagtgaaaattg-attattttattggaatatgttgcaatagGTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTATGAGATTCTTGCAGCGGGTGAGGTGCTGGGAGTACCGCCAGCAACCTTC

upper sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 1
lower sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 1
-------gtgagctctcgtatttaccgctgatggcctctccgattcgcatgcgtgggtcttaccgtgtgtc--gtatcattt-tgtcgctgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC
            || |  | | |  | | |||| | | || |  | |       |  |||    ||   |   | || |  | ||    |     |||||||||||||| ||||| |||||||||||| ||| ||||||||| ||||||||| ||||  | ||| | ||  | || ||||||||  | ||||||||  |
gtatgtttctcactattatctctctctcagatgtcgtttctgtattgttcattagattctagaagttaattaaggatgaaatgtgatttttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTTCTTCAGAGGGTTAGGTGTTGGGAGTATCGCCAGCAGCCTTC

upper sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 1
lower sequence: AT4G16720.1 (Arabidopsis thaliana), 3'ss of exon 1
----------------------------------------------------------gtgagctctcgtatttaccgct--gatggcctctccgattcgcatgcgtgggt-cttaccgtgtgtcgtatcattttgtcgctgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC
                                                           | ||||     |||    | |   |||   | || | | || ||  ||   | |  ||    |  | ||    ||||      ||  | ||||||||||||||| || || ||||||||| ||| ||| ||||||||||||||| | ||| | ||| | ||  | |||||||||||||| ||||| ||  |
gtaaatccttcttctccatcccttcttctagatcaaatcctctcgtttcttagatcgattcagcttctccattgtttgttcaaatgatgtttctgttacgtatctgttattgcaaactacttagcttaatgatttgat----tgatatagGTGCGTACAAGTATGTATCTGAGCTATGGAGGAAGAAACAGTCCGATGTGATGAGATTCCTCCAGAGGGTTAGGTGCTGGGAGTACAGACAGCAACCTTC

upper sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv16s0013g02020.t01 (Vitis vinifera), 3'ss of exon 1
-------gtgagctctcgtatttaccgctgatggcctctccgattcgcatgcgtgggtcttaccgtgtgtcgtatcattttgt----------cgctgtggcac-agGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC
          |||| || |     |   |  |  |  || | |  || ||    |||| || |  | ||| |  || | || |          ||  ||||||  ||| || ||||||||||| |||||||||||| ||| |||||| |||||||||||| ||||| ||||| | ||| | |||||||||||  | ||||| ||  |
gtaagcaccaagctttccttcactctctttttctctacttccaagcggatattagggttttccgatttgtggcttcctgttattggcattgttcgtggtggcattagGGGCTTACAAGTACGTGTCGGAGCTATGGAGGAAGAAGCAATCCGATGTGATGAGGTTCTTGCAGAGGGTGAGGTGCTGGGAGTATCGCCAGCACCCTTC

upper sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S152_141V6.1 (Physcomitrella patens), 3'ss of exon 1
---------------------------------------------------------------------------------gtgagctctcgtatttaccgctg-atggcctctccgattcgcatgcgtgggtcttaccgtgtgtcgtatcattttgtcgc-tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC
                                                                                  |   || || | || |    ||    |  |   |||     |   |  | | ||    | | |  | |  |||| |    | |    ||||||||||||||||| ||  |||||| ||| ||| ||||||||| |||||| |||| ||| ||| ||| |||||||||||||||||||||||||  || | 
gtattcattcccagctccctctctctctagcgctgcgtagctgcgtagctgcgtttttttattttttttattttttatttttttccctttccttttgaggtttgcgcagtgtgatcgagatctaactggagttttttttttttttttttttttttttttaaatttcctccagGTGCGTACAAGTACATCGAGGAGCTGTGGAGGAAGAAGCAGTCTGATGTGCTGCGTTTCTTGCTGCGTGTGCGCTGCTGGGAGTACAGGCAGCTCCCCGG

upper sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S68_114V6.1 (Physcomitrella patens), 3'ss of exon 1
-------gtgagctctcgtatttaccgct---gatggcctctccgattcgcatgcgtgggtcttac-cgtgtgtc-gtatcattttgtcgctgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC
       |  ||   |  |  ||   | |    ||| | | |  | ||         ||   ||||  |  |||   | |||  |  ||  |||    |||| |||||||||||| |    ||||||||| ||| ||||||||| |||||| |||| ||| |   ||| ||||| |||||||||||||||||||  || | 
ggttgttggtagtgtttttgattgttgattggaatgacatttagggttttgggaaacggtggttacatgcatgtttatgtcaaatgatc-ttgttctgcagGCGCGTACAAGTACATTGAAGAGCTATGGAGGAAGAAGCAGTCTGATGTGCTGCGATTCCTATTGCGTGTGCGATGCTGGGAGTACAGGCAGCTCCCAGG

upper sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S34_445V6.1 (Physcomitrella patens), 3'ss of exon 1
-----gtga-gctctcgtatttac-cgctgatggcctctccgattcgcatgcgtgggtctt-accgtgtg-tcgtatcattttgtcgctgtggcac--agGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC
     |  | ||| |   |||| | |  | |  |   |  || |||| |    | ||| || |  || || | ||     ||| | | | | || |  ||| || ||||||||| |   |||| | ||||||| ||||||||| |||||| |||||||  ||| ||| |||||||||||||||||||||||||  || | 
ttggtgcaatgctgttcaattttcacaattagagttccgtcggttcggagttttaggtgttgattgtctgattgttggtatttattgattttgctctcagGCGCCTACAAGTACATTGAGGAGTTGTGGCGGAAGAAGCAGTCTGATGTGCTGCGGTTTTTGCTGCGTGTGCGCTGCTGGGAGTACAGGCAGCTCCCCGG

upper sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 1
---------------------------------gtgagctct---cgtatttaccgctgatggcctctccgattcgcatgcgtgggtcttaccgtgtgtcgtatcattttgtcgctgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC
                                   || ||||    |||| |   ||||| | |    | |||||| |        ||   |  |   | |  |  || | | | ||      |||||||||||||||| |   |||||| ||| ||| ||| |||||||||||| |||| ||| ||| ||| || |||||||||||||||||||||| ||| | 
gtaagcaatttctcgcagcctctgccctcgtcatggatctctgtgtgtatgtggagctgacgcctgaccagattcggaatgaattctcaacctttaactagggtttttgttttgttgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGCTGCGCTTCCTGCTGCGTGTTCGCTGCTGGGAGTACAGGCAGCTGCCCGG

upper sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S28_15V6.1 (Physcomitrella patens), 3'ss of exon 1
--------------gtgagctctcgt-atttaccgctgatggcctctccgattcgcatgcgtgggtcttaccgtgtgtcgtatcattttgtcgctgtg-gcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC
               ||  |    ||   ||   | || | |  |   ||| | |  |  | |||| |      | ||| |||   |||||    ||  |   ||| |||||||| ||| |   |||||||||||||| |||||||||||||||| |||| ||| |||  || |||||||||||||||||||||||||  || | 
cttcgatagctacgttgcaccggtgttgcttcatgttgttagtgttggcgaattgtgtatg-gggtttcg----gggtcttatttatttgttttggtttgtttagGGGCGTACAAATACATTGAGGAGCTATGGCGGAAGAAGCAGTCCGATGTGTTGCGATTCTTGCTTCGTGTGCGCTGCTGGGAGTACAGGCAGCTTCCCGG

upper sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S7_364V6.1 (Physcomitrella patens), 3'ss of exon 1
---------------gtgagctctcgt-atttaccgctgatggcctctccgattcgcatgcgtgggtcttaccgtgtgtcgtatcattttgtcgctgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC
               ||  | |   |  |||    | |    | |       | ||     || ||  ||    |||   || | | ||||     ||  | |||| |||||||||||| |   |||||||||||||| |||||||||||| ||| |||| ||| |||  || |||||||||||||||||||| || |  || | 
gctttgtgttgtttggtagggttgggccattcgatggttggtgacgagagagtccgttaatgttgggttttttttgtaatgtgtgaatttg-----gttccccagGCGCGTACAAGTACATTGAGGAGCTATGGCGGAAGAAGCAGTCCGACGTGCTGCGTTTCTTGCTTCGTGTGCGCTGCTGGGAGTACAGACAACTACCCGG

upper sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 1
lower sequence: EFJ27946 (Selaginella moellendorffii), 3'ss of exon 1
gtgagctctcgtatttaccgctgatggcctctccgattcgcatgcgtgggtcttaccgtgtgtcgtatcattttgtcgctgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC
              | | | ||| | |     |  |  |||  || |   |||  | |    ||| ||   ||  || || |    ||||||| ||||||||| ||  |||||||||||||| |||||| |||||||||||||| ||| ||  |||||| ||||||||||||||  | ||||  || | 
-------------gtaagcactgctcgatcagctcaggcgctcgcatttctctcgcggctgatcgcattccttcctctctct---ccagGTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGATGCGCTTCCTGATGCGCGTCCGCTGCTGGGAGTATCGCCAGCTCCCCGG

upper sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 1
lower sequence: EFJ36722 (Selaginella moellendorffii), 3'ss of exon 1
gtgagctctcgtatttaccgctgatggcctctccgattcgcatgcgtgggtcttaccgtgtgtcgtatcattttgtcgctgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC
              | | || || | |     |  |  |||  || |   |||  | |    ||| ||   ||  || || |    ||||||| ||||| ||| ||  |||||||||||||| |||||| |||||||||||||| ||| ||  |||||| ||||||||||||||  | ||||  || | 
-------------gtaagcgttgctcgatcagctcaggcgctcgcatttctctcgcggctgatcgcattccttcctctctct---ccagGTGCCTACAAATACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGATGCGCTTCCTGATGCGCGTCCGCTGCTGGGAGTATCGCCAGCTCCCCGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211411973|gb|FL105982.1|FL105982
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCGNAGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211409415|gb|FL105961.1|FL105961
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAKYCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211406862|gb|FL105957.1|FL105957
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCG-AGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211411970|gb|FL105979.1|FL105979
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAKCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211411971|gb|FL105980.1|FL105980
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCG-AGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211417070|gb|FL106006.1|FL106006
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCANCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCG-AGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211414517|gb|FL105990.1|FL105990
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCGNAGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211411975|gb|FL105984.1|FL105984
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGAGAGCTATGGCG-AGGAAGCAGTCCGATGTG
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCG-GAGCTATGGCGGAGGAAGCAGTCCGATGTG
EST: gi|211414521|gb|FL105994.1|FL105994
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCGNAGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211406860|gb|FL105955.1|FL105955
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGSCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211409426|gb|FL105972.1|FL105972
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTAT
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTAT
EST: gi|211409417|gb|FL105963.1|FL105963
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGTAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211417068|gb|FL106004.1|FL106004
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCADCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCG
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCG
EST: gi|211417073|gb|FL106009.1|FL106009
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCG-AGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211406863|gb|FL105958.1|FL105958
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCG-AGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211414516|gb|FL105989.1|FL105989
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCG-AGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211417071|gb|FL106007.1|FL106007
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGC
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGC
EST: gi|211414523|gb|FL105996.1|FL105996
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCG-AGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211411976|gb|FL105985.1|FL105985
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211409414|gb|FL105960.1|FL105960
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCG-AGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211414528|gb|FL106001.1|FL106001
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCG-AGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211409422|gb|FL105968.1|FL105968
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGATCTATGGCGGAGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211409420|gb|FL105966.1|FL105966
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCG-AGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211406861|gb|FL105956.1|FL105956
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCGNAGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211414525|gb|FL105998.1|FL105998
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211251613|gb|FL262028.1|FL262028
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGACCTATGGCGGAGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211411968|gb|FL105977.1|FL105977
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCGG
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGG
EST: gi|211411972|gb|FL105981.1|FL105981
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCANMCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211406859|gb|FL105954.1|FL105954
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211411977|gb|FL105986.1|FL105986
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCGNAGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211411967|gb|FL105976.1|FL105976
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCANNCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCGNAGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211409413|gb|FL105959.1|FL105959
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCG-AGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211411969|gb|FL105978.1|FL105978
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCGNAGGAAGCAGTCCGATCGTG
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGAT-GTG
EST: gi|211226134|gb|FK959875.1|FK959875
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGTCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211409424|gb|FL105970.1|FL105970
EST:     TTCCCCACCCCGCCGCCGCCATCKCACGCCCGCADCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGC
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGC
EST: gi|211417074|gb|FL106010.1|FL106010
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATRG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211409419|gb|FL105965.1|FL105965
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCG-AGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211414519|gb|FL105992.1|FL105992
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCG-AGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211409425|gb|FL105971.1|FL105971
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCG-AGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211409421|gb|FL105967.1|FL105967
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCANCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211414529|gb|FL106002.1|FL106002
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCG-AGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|211411965|gb|FL105974.1|FL105974
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCG-AGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
EST: gi|9028655|gb|BE238695.1|BE238695
EST:     TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGG                         GTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA
genomic: TTCCCCACCCCGCCGCCGCCATCGCACGCCCGCAGCCGCATCCGCTATGGgtgagctctc ... tgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattcgcatgcgtgggtcttaccgtgtgtcgtatcattttgtcgctgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC
               gtcttac  putative branch site (score: 3)
                               tatcatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagctctcgtatttaccgctgatggcctctccgattcgcatgcgtgggtcttaccgtgtgtcgtatcattttgtcgctgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT