1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttcccaacagctgcatcgattgaatgaccaatgtagcttatccatgccttgacttgtcaactgctgcaacatttctggttttccggtgtgcctattgcagGTTCATCCTGTTCTTATGCTGATCGGCTACATTATCCTCGGCAGTGAAG
species | Zea mays |
transcript | GRMZM2G034668_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCGCGGCGGCCTCGCGCTCGAGGCACAGAACAAGAACCTCATCTTCAAC GTTCATCCTGTTCTTATGCTGATCGGCTACATTATCCTCGGCAGTGAAGEST: gi|37416798|gb|CF646050.1|CF646050
genomic: TCCGCGGCGGCCTCGCGCTCGAGGCACAGAACAAGAACCTCATCTTCAACgtaagcgcca ... cctattgcagGTTCATCCTGTTCTTATGCTGATCGGCTACATTATCCTCGGCAGTGAAG
EST: TCCGCGGCGGCCTCGCGCTCGAGGCACAGAACAAGAACCTCATCTTCAAC GTTCATCCTGTTCTTATGCTGATCGGCTACATTATCCTCGGCAGTGAAGEST: gi|37418829|gb|CF647087.1|CF647087
genomic: TCCGCGGCGGCCTCGCGCTCGAGGCACAGAACAAGAACCTCATCTTCAACgtaagcgcca ... cctattgcagGTTCATCCTGTTCTTATGCTGATCGGCTACATTATCCTCGGCAGTGAAG
EST: TCCGCGGCGGCCTCGCGCTCGAGGCACAGAACAAGAACCTCATCTTCAAC GTTCATCCTGTTCTTATGCTGATCGGCTACATTATCCTCGGCAGTGAAGEST: gi|211145323|gb|FL227337.1|FL227337
genomic: TCCGCGGCGGCCTCGCGCTCGAGGCACAGAACAAGAACCTCATCTTCAACgtaagcgcca ... cctattgcagGTTCATCCTGTTCTTATGCTGATCGGCTACATTATCCTCGGCAGTGAAG
EST: TCCGCGGCGGCCTCGCGCTCGAGGCACAGAACAAGAACCTCATCTTCAAC GTTCATCCTGTTCTTATGCTGATCGGCTACATTATCCTCGGCAGTGAAGEST: gi|5268682|gb|AI770646.1|AI770646
genomic: TCCGCGGCGGCCTCGCGCTCGAGGCACAGAACAAGAACCTCATCTTCAACgtaagcgcca ... cctattgcagGTTCATCCTGTTCTTATGCTGATCGGCTACATTATCCTCGGCAGTGAAG
EST: TCCGCGGCGGCCTCGCGCTCGAGGCACAGAACAAGAACCTCATCTTCAAC GTTCATCCTGTTCTTATGCTGATCGGCTACATTATCCTCGGCAGTGAAGEST: gi|76287085|gb|DV026653.1|DV026653
genomic: TCCGCGGCGGCCTCGCGCTCGAGGCACAGAACAAGAACCTCATCTTCAACgtaagcgcca ... cctattgcagGTTCATCCTGTTCTTATGCTGATCGGCTACATTATCCTCGGCAGTGAAG
EST: TCCGCGGCGGCCTCGCGCTCGAGGCACAGAACAAGAACCTCATCTTCAAC GTTCATCCTGTTCTTATGCTGATCGGCTACATTATCCTCGGCAGTGAAGEST: gi|38687936|gb|CK144967.1|CK144967
genomic: TCCGCGGCGGCCTCGCGCTCGAGGCACAGAACAAGAACCTCATCTTCAACgtaagcgcca ... cctattgcagGTTCATCCTGTTCTTATGCTGATCGGCTACATTATCCTCGGCAGTGAAG
EST: TCCGCGGCGGCCTCGCGCTCGAGGCACAGAACAAGAACCTCATCTTCAAC GTTCATCCTGTTCTTATGCTGATCGGCTACATTATCCTCGGCAGTGAAGEST: gi|211145324|gb|FL227338.1|FL227338
genomic: TCCGCGGCGGCCTCGCGCTCGAGGCACAGAACAAGAACCTCATCTTCAACgtaagcgcca ... cctattgcagGTTCATCCTGTTCTTATGCTGATCGGCTACATTATCCTCGGCAGTGAAG
EST: TCCGCGGCGGCCTCGCGCTCGAGGCACAGAACAAGAACCTCATCTTCAAC GTTCATCCTGTTCTTATGCTGATCGGCTACATTATCCTCGGCAGTGAAGEST: gi|67020876|gb|CO449625.1|CO449625
genomic: TCCGCGGCGGCCTCGCGCTCGAGGCACAGAACAAGAACCTCATCTTCAACgtaagcgcca ... cctattgcagGTTCATCCTGTTCTTATGCTGATCGGCTACATTATCCTCGGCAGTGAAG
EST: TCCGCGGCGGCCTCGCGCTCGAGGCACAGAACAAGAACCTCATCTTCAAC GTTCATCCTGTTCTTATGCTGATCGGCTACATTATCCTCGGCAGTGAAGEST: gi|211145326|gb|FL227340.1|FL227340
genomic: TCCGCGGCGGCCTCGCGCTCGAGGCACAGAACAAGAACCTCATCTTCAACgtaagcgcca ... cctattgcagGTTCATCCTGTTCTTATGCTGATCGGCTACATTATCCTCGGCAGTGAAG
EST: TCCGCGGCGGCCTCGCGCTCGAGGCACAGAACAAGAACCTCATCTTCAAC GTTCATCCTGTTCTTATGCTGATC
genomic: TCCGCGGCGGCCTCGCGCTCGAGGCACAGAACAAGAACCTCATCTTCAACgtaagcgcca ... cctattgcagGTTCATCCTGTTCTTATGCTGATC
gccttgacttgtcaactgctgcaacatttctggttttccggtgtgcctattgcagGTTCATCCTGTTCTTATGCTGATCGGCTACATTATCCTCGGCAGTGAAG
ccttgac putative branch site (score: 24)
aacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcccaacagctgcatcgattgaatgaccaatgtagcttatccatgccttgacttgtcaactgctgcaacatttctggttttccggtgtgcctattgcagGTTCATCCTGTTCTTATGCTGATCGGCTACATTATCCTCGGCAGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - -cagctgc
- - - - - - - - - -ttgaatg
- - - - - - - - - - - - - - - -tgtagct
- - - - - - - - - - - - - - - - - - - - tccatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgctg