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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaacctccctgtgcagctccatgggccacgcgggtcccatagatatatataaataattttctattttctttgaccgactggtgttcttttaaaagtttagttgtgctatccaacctttttcagTTATCTCTGCCAAAAATGGCCAGCAAGCATGGGCTTATCTTGAAGATAAGGGAAACAACATAGATCTTGTTTTGACTGAGGTTTTTATGCCCGGTGTATC

Basic information

species Zea mays
transcript GRMZM2G033962_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G033962_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g49460.3 (Oryza sativa), 3'ss of exon 4
gtcaacctccctgtgcagctccatgggccacgcgggtcccatagatatatataaataattttctattttctttgaccgactggtgttcttttaaaagtttagttgtgctatccaacctttttcagTTATCTCTGCCAAAAATGGCCAGCAAGCATGGGCTTATCTTGAAGATAAGGGAAACAACATAGATCTTGTTTTGACTGAGGTTTTTATGCCCGGTGTATC
              | || ||  |   || |  ||| || |    | | | |||   |     |||||| | |       |||| ||    | |  |||   ||     ||  |    | |  ||| ||| ||||  |||||||||||||||||||| | ||||| ||||||| |  ||||| ||| |||||||||||||| |||||| ||||||| ||||||||
-------------ggaagttcttt---ccccttggggccaaggtttttttttaatgcacaagatattttatct---ttgttggtctttgactgagtgtt--atta----atttatttctgtgaagTCATCCCTGCTGAAAATGGCCAGCAAGCATGGACATATCTAGAAGATATGCAAAACAGCATTGATCTTGTTTTGACAGAGGTTGTTATGCCTGGTGTATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaccgactggtgttcttttaaaagtttagttgtgctatccaacctttttcagTTATCTCTGCCAAAAATGGCCAGCAAGCATGGGCTTATCTTGAAGATAAGGGAAACAACATAGATCTTGTTTTGACTGAGGTTTTTATGCCCGGTGTATC
 ctttgac  putative branch site (score: 4)
                                             cctttttc  putative PPT
               ttcttttaaaagttta  TA-rich tract