Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acatggaaaatgtcttatttgtttttctgttgctgcaagtctgttcaagttgcagaacactgtgttgtgtacgtaattcatggtctatcgttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGCCGTGTATTCGAGGACATGTGTGCACAAATGTACTACCGTGGCAAGATGT

Basic information

species Zea mays
transcript GRMZM2G033894_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G033894_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g02900.1 (Oryza sativa), 3'ss of exon 1
acatggaaaatgtcttatttgtttttctgttgctgcaagtctgttcaagttgcagaacactgt-gttgtgtacgtaattcatggtctatcgttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGCCGTGTATTCGAGGACATGTGTGCACAAATGTACTACCGTGGCAAGATGT
   | |  | |||  |  ||   |        || ||  |    |   ||| ||        | || |  | | | ||||||    | || |||||  ||||| || || |||||||||||  |||||||||| ||||||||||||||||||||| | |||||||| ||||| || |||||||||||||||||||||||||
ttgtagccactgtggtgcttcgatagggaaaact-catcttgtctgctgttacaagtgttaatagtagccttcttgattcatatcgtttcattttccacagGCTGTCACGCGGGAAGAGGCTTTGGAGCTGTACGAGGACATGGTTCTTGGCCGTATTTTCGAGGATATGTGCGCGCAAATGTACTACCGTGGCAAGATGT

upper sequence: GRMZM2G033894_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT1G01090.1 (Arabidopsis thaliana), 3'ss of exon 1
acatggaaaatgtcttatttgtttttctgttgctgcaagtctgttcaagttgcagaacactgtgttgtgtacgtaattcatggtctatcgttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGCCGTGTATTCGAGGACATGTGTGCACAAATGTACTACCGTGGCAAGATGT
    | |   |  ||    |  | | ||  |  || || | |   |||||||    |   | |||||| |   | ||| | |     |  |||     ||  | | |||   || || | | ||||| ||||||| || ||| | || ||  |    ||||| ||||||||||| |||||||| ||||| ||||||||||
----gtacgcttcctctcctcgtctccttcttttggaatttta--caagttgtgaga---tttgttgtat---tgatttaag-----taatttgaaatagTTGATAACCAAAGAGGAAGGATTGGAGTTGTATGAAGATATGATACTAGGTAGATCTTTCGAAGACATGTGTGCTCAAATGTATTACCGAGGCAAGATGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148969138|gb|EE019876.2|EE019876
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211380146|gb|FL420168.1|FL420168
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211481798|gb|FL382335.1|FL382335
EST:     CGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCNGCGCATCCBG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGG
genomic: CGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCC-Ggtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGG
EST: gi|211045783|gb|FL411672.1|FL411672
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211487869|gb|FL397197.1|FL397197
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211082126|gb|FL394096.1|FL394096
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGC-GCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|149009452|gb|EE153965.2|EE153965
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|149015629|gb|EE045421.2|EE045421
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|16816933|gb|BM056107.1|BM056107
EST:     TCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGG-TACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|149005073|gb|EE039601.2|EE039601
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211217147|gb|FL271087.1|FL271087
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGA
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGA
EST: gi|149094860|gb|EE180435.2|EE180435
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|91048939|gb|EB159357.1|EB159357
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211217149|gb|FL271089.1|FL271089
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|148928447|gb|EE285230.2|EE285230
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|149073652|gb|EE161957.2|EE161957
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211450025|gb|FL396748.1|FL396748
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211542339|gb|FL400754.1|FL400754
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211215201|gb|FL412339.1|FL412339
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211147463|gb|FL403062.1|FL403062
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211217148|gb|FL271088.1|FL271088
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGC-GCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211469233|gb|FL410781.1|FL410781
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211233820|gb|FL389683.1|FL389683
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|71769826|gb|DR967763.1|DR967763
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|31354999|gb|CD439356.1|CD439356
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211144836|gb|FL418212.1|FL418212
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211158076|gb|FL390999.1|FL390999
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211217146|gb|FL271086.1|FL271086
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211332804|gb|FL423288.1|FL423288
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211371533|gb|FL402374.1|FL402374
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211443106|gb|FL373030.1|FL373030
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211223902|gb|FL407473.1|FL407473
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211217150|gb|FL271090.1|FL271090
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211027837|gb|FL421240.1|FL421240
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211360488|gb|FL382210.1|FL382210
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211453962|gb|FL381455.1|FL381455
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211233763|gb|FL382651.1|FL382651
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211400675|gb|FL399243.1|FL399243
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211303471|gb|FL412819.1|FL412819
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211073434|gb|FL369881.1|FL369881
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|148994789|gb|EE034234.2|EE034234
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|148944646|gb|EC889780.2|EC889780
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211231680|gb|FL380041.1|FL380041
EST:     CYGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|211499129|gb|FL383717.1|FL383717
EST:     CGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGGCGCATCCG                         GCGGTTACACGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGG
genomic: CGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCG-CGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGG
EST: gi|149012085|gb|EE042505.2|EE042505
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
EST: gi|149001024|gb|EE038272.2|EE038272
EST:     CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCG                         GCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC
genomic: CCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 426

CCGCGGCGCGGTGCACCACCCGCGCCTGCGCACCGCGCTCGCCGTCTCCTCCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGCCGTGTATTCGAGGACATGTGTGCACAAATGTACTACCGTGGCAAGATGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 373

CCGCGGCGCGGTGCACCACCCGCGCCTGCGCACCGCGCTCGCCGTCTCCTCCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGCCGTGTATTCGAGGACATGTGTGCACAAATGTACTACCGTGGCAAGATGT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 266

CCGCGGCGCGGTGCACCACCCGCGCCTGCGCACCGCGCTCGCCGTCTCCTCCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGCCGTGTATTCGAGGACATGTGTGCACAAATGTACTACCGTGGCAAGATGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1649

CCGCGGCGCGGTGCACCACCCGCGCCTGCGCACCGCGCTCGCCGTCTCCTCCGACCTGCTCGCTGGGAACAAGGCCGCGCAGGCCGCCGCCGCGCATCCGgtatggaata ... ttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGCCGTGTATTCGAGGACATGTGTGCACAAATGTACTACCGTGGCAAGATGT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagttgcagaacactgtgttgtgtacgtaattcatggtctatcgttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGCCGTGTATTCGAGGACATGTGTGCACAAATGTACTACCGTGGCAAGATGT
                                      tctatcgttttctcc  CT-rich tract
                            taattcat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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acatggaaaatgtcttatttgtttttctgttgctgcaagtctgttcaagttgcagaacactgtgttgtgtacgtaattcatggtctatcgttttctccagGCGGTTACCCGGGAAGAGGCACTGGAGCTGTATGAGGACATGGTTCTTGGCCGTGTATTCGAGGACATGTGTGCACAAATGTACTACCGTGGCAAGATGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
-catggaa
- - - - - - - - - -tgttttt
- - - - - - - - - - - - - - gttgctg
- - - - - - - - - - - - - - - - - - - - - - - - gttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attcatg