1 5' 3' | 2 5' 3' | 3 5' 3' |
...agttgatagaaaattgttatgttggttcaatttactgataagagtctaaaatcataacccagtgtacagacacttaaccacatgcgtcctaacattgtagGCGTACATAATGGAGCTGGAAGCTGAGGTGGCAAAACTCAAGGACCAGAATGAGGAGTTGCAGAAAAAGCAG
species | Zea mays |
transcript | GRMZM2G033413_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCATGATCAAGAACAGGGAGTCGGCCGCCAGGTCGCGTGCGAGGAAGCAG GCGTACATAATGGAGCTGGAAGCTGAGGTGGCAAAACTCAAGGACCAGAATEST: gi|211173685|gb|FL443064.1|FL443064
genomic: GCATGATCAAGAACAGGGAGTCGGCCGCCAGGTCGCGTGCGAGGAAGCAGgtggagcctt ... aacattgtagGCGTACATAATGGAGCTGGAAGCTGAGGTGGCAAAACTCAAGGACCAGAAT
EST: GCATGATCAAGAACAGGGAGTCGGCCGCCAGGTCGCGTGCGAGGAAGCAG GCGTACATAATGGAGCTGGAAGCTGAGGTGGCAAAACTCAAGGACCAGAATEST: gi|67031968|gb|CO460717.1|CO460717
genomic: GCATGATCAAGAACAGGGAGTCGGCCGCCAGGTCGCGTGCGAGGAAGCAGgtggagcctt ... aacattgtagGCGTACATAATGGAGCTGGAAGCTGAGGTGGCAAAACTCAAGGACCAGAAT
EST: GCATGATCAAGAACAGGGAGTCGGCCGCCAGGTCGCGTGCGAGGAAGCAG GCGTACATAATGGAGCTGGAAGCTGAGGTGGCAAAACTCAAGGACCAGAATEST: gi|60401364|gb|DN234171.1|DN234171
genomic: GCATGATCAAGAACAGGGAGTCGGCCGCCAGGTCGCGTGCGAGGAAGCAGgtggagcctt ... aacattgtagGCGTACATAATGGAGCTGGAAGCTGAGGTGGCAAAACTCAAGGACCAGAAT
EST: GCATGATCAAGAACAGGGAGTCGGCCGCCAGGTCGCGTGCGAGGAAGCAG GCGTACATAATGGAGCTGGAAGCTGAGGTGGCAAAACTCAAGGACCAGAATEST: gi|60340442|gb|DN207415.1|DN207415
genomic: GCATGATCAAGAACAGGGAGTCGGCCGCCAGGTCGCGTGCGAGGAAGCAGgtggagcctt ... aacattgtagGCGTACATAATGGAGCTGGAAGCTGAGGTGGCAAAACTCAAGGACCAGAAT
EST: GCATGATCAAGAACAGGGAGTCGGCCGCCAGGTCGCGTGCGAGGAAGCAG GCGTACATAATGGAGCTGGAAGCTGAGGTGGCAAAACTCAAGGACCAGAATEST: gi|60398155|gb|DN230971.1|DN230971
genomic: GCATGATCAAGAACAGGGAGTCGGCCGCCAGGTCGCGTGCGAGGAAGCAGgtggagcctt ... aacattgtagGCGTACATAATGGAGCTGGAAGCTGAGGTGGCAAAACTCAAGGACCAGAAT
EST: GCATGATCAAGAACAGGGAGTCGGCCGCCAGGTCGCGTGCGAGGAAGCAG GCGTACATAATGGAGCTGGAAGCTGAGGTGGCAAAACTCAAGGACCAGAAT
genomic: GCATGATCAAGAACAGGGAGTCGGCCGCCAGGTCGCGTGCGAGGAAGCAGgtggagcctt ... aacattgtagGCGTACATAATGGAGCTGGAAGCTGAGGTGGCAAAACTCAAGGACCAGAAT
ctaaaatcataacccagtgtacagacacttaaccacatgcgtcctaacattgtagGCGTACATAATGGAGCTGGAAGCTGAGGTGGCAAAACTCAAGGACCAGAATGAGGAGTTGCAGAAAAAGCAG
tcctaac putative branch site (score: 56)
atcataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttgatagaaaattgttatgttggttcaatttactgataagagtctaaaatcataacccagtgtacagacacttaaccacatgcgtcctaacattgtagGCGTACATAATGGAGCTGGAAGCTGAGGTGGCAAAACTCAAGGACCAGAATGAGGAGTTGCAGAAAAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - -atagaaaa
- - - - - - - - - -tgttggt
- - - - - - - - - - - - - - - - tactgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacatgc