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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcttttattttgaacaagcaaagcttcctggttcccttgtttacgtttggggttctataatttgctgaattgttgctataatatatatttttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGATTACCACGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTCGTAGTTG

Basic information

species Zea mays
transcript GRMZM2G032699_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032699_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g22950.3 (Oryza sativa), 3'ss of exon 1
atcttttatt--ttgaacaagcaaagcttcctggttcccttgtttacgtttggggttctataatttgctgaattgttgctataatatatatttttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGATTACCACGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTCGTAGTTG
 |   | |||  |||  | | |   ||    || ||   |||  |   | |    |||| |  || | |  | |    ||  |||   |  ||||    ||||| ||||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
gtacatgattggttgttccaactttgcaaattgcttaagttggctgtatatcat-ttcttttgttggttagaattgcactg-aatggttccttttttgacagGTTTGCGATGAGCTTGAGGACGTGATGGAAGAAGGTGGTATACTAGTAGATTACCATGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTTGTAGTTG

upper sequence: GRMZM2G032699_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g22950.2 (Oryza sativa), 3'ss of exon 2
atcttttattttgaacaagcaaagcttcctggttcccttgtttacgtttggggttctataatttgctgaattgttgctataatatatatttttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGATTACCACGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTCGTAGTTG----------------------------------------------
                                                                                                                                      |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||                                              
--------------------------------------------------------------------------------------------------------------------------------------gtggtatactagtagattaccatggatgtgatttctttccagaacgttggtttgaccttgtagttgtgctccaaacagATAACTCAATTCTGCATGATCGCTTGACTAGCAG

upper sequence: GRMZM2G032699_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g22950.2 (Oryza sativa), 3'ss of exon 1
atcttttatt--ttgaacaagcaaagcttcctggttcccttgtttacgtttggggttctataatttgctgaattgttgctataatatatatttttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGATTACCACGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTCGTAGTTG
 |   | |||  |||  | | |   ||    || ||   |||  |   | |    |||| |  || | |  | |    ||  |||   |  ||||    ||||| ||||| |||||||||||| ||||||||||||                                                                  
gtacatgattggttgttccaactttgcaaattgcttaagttggctgtatatcat-ttcttttgttggttagaattgcactg-aatggttccttttttgacagGTTTGCGATGAGCTTGAGGACGTGATGGAAGAAG------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9733393|gb|BE512250.1|BE512250
EST:     ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGTATACTAGTAGAT
genomic: ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
EST: gi|5525640|gb|AI861533.1|AI861533
EST:     ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGTATACTAGTAGAT
genomic: ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
EST: gi|37387580|gb|CF630987.1|CF630987
EST:     ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGTATACTAGTAGAT
genomic: ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
EST: gi|211455241|gb|FK989201.1|FK989201
EST:     ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGTATACTAGTAGAT
genomic: ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
EST: gi|6194875|gb|AW146979.1|AW146979
EST:     CAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGTATACTAGTAGAT
genomic: CAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
EST: gi|6695878|gb|AW288986.1|AW288986
EST:     ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGTATACTAGTAGAT
genomic: ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
EST: gi|60341109|gb|DN208082.1|DN208082
EST:     ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
genomic: ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
EST: gi|40335831|gb|CK369901.1|CK369901
EST:     ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGTATACTAGTAGAT
genomic: ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
EST: gi|60359354|gb|DN226327.1|DN226327
EST:     ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGTATACTAGTAGAT
genomic: ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
EST: gi|6056726|gb|AW091131.1|AW091131
EST:     GACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGTATACTAGTAGAT
genomic: GACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
EST: gi|60358371|gb|DN225344.1|DN225344
EST:     ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTG                         GTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT
genomic: ACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcg ... tttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttggggttctataatttgctgaattgttgctataatatatatttttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGATTACCACGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTCGTAGTTG
                                           tttttgcc  CT-rich tract
                     tgaattgttgctataa  TA-rich tract