1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaatttcccatcgtttatctctgcatttatatgcatatttctgtattccatacattatttattcctcctctagcctagctacctgtctgaaacgctgtactgtgtgtcgcaattttgtcacatgtacacagATCGCGATCAGAGATTGAGGAGGCATCCTGTCCAGCTGTTCCACTTCCATCCATCCATCCACCACCAGAGAAGAGCATACAGTAGTGCACCACTCATCTC
species | Zea mays |
transcript | GRMZM2G032619_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTACTGCTACTCCGATCGATACATACATACAGATTCCCTGCACCGGCCG ATCGCGATCAGAGATTGAGGAGGCATCCTGTCCAGCTGTTCCACTTCCATCEST: gi|149009507|gb|EE041497.2|EE041497
genomic: CCTACTGCTACTCCGATCGATACATACATACAGATTCCCTGCACCGGCCGgtaatttccc ... atgtacacagATCGCGATCAGAGATTGAGGAGGCATCCTGTCCAGCTGTTCCACTTCCATC
EST: CCTACTGCTACTCCGATCGATACATACATACAGATTCCCTGCACCGGCCG ATCGCGATCAGAGATTGAGGAGGCATCCTGTCCAGCTGTTCCACTTCCATCEST: gi|149009318|gb|EE041385.2|EE041385
genomic: CCTACTGCTACTCCGATCGATACATACATACAGATTCCCTGCACCGGCCGgtaatttccc ... atgtacacagATCGCGATCAGAGATTGAGGAGGCATCCTGTCCAGCTGTTCCACTTCCATC
EST: CCTACTGCTACTCCGATCGATACATACATACAGATTCCCTGCACCGGCCG ATCGCGATCAGAGATTGAGGAGGCATCCTGTCCAGCTGTTCCACTTCCATCEST: gi|149072770|gb|EE161013.2|EE161013
genomic: CCTACTGCTACTCCGATCGATACATACATACAGATTCCCTGCACCGGCCGgtaatttccc ... atgtacacagATCGCGATCAGAGATTGAGGAGGCATCCTGTCCAGCTGTTCCACTTCCATC
EST: CCTACTGCTACTCCGATCGATACATACATACAGATTCCCTGCACCGGCCG ATCGCGATCAGAGATTGAGGAGGCATCCTGTCCAGCTGTTCCACTTCCATCEST: gi|148954313|gb|EC899724.2|EC899724
genomic: CCTACTGCTACTCCGATCGATACATACATACAGATTCCCTGCACCGGCCGgtaatttccc ... atgtacacagATCGCGATCAGAGATTGAGGAGGCATCCTGTCCAGCTGTTCCACTTCCATC
EST: CCTACTGCTACTCCGATCGATACATACATACAGATTCCCTGCACCGGCCG ATCGCGATCAGAGATTGAGGAGGCATCCTGTCCAGCTGTTCCACTTCCATC
genomic: CCTACTGCTACTCCGATCGATACATACATACAGATTCCCTGCACCGGCCGgtaatttccc ... atgtacacagATCGCGATCAGAGATTGAGGAGGCATCCTGTCCAGCTGTTCCACTTCCATC
agctacctgtctgaaacgctgtactgtgtgtcgcaattttgtcacatgtacacagATCGCGATCAGAGATTGAGGAGGCATCCTGTCCAGCTGTTCCACTTCCATCCATCCATCCACCACCAGAGAAGAGCATACAGTAGTGCACCACTCATCTC
aattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttcccatcgtttatctctgcatttatatgcatatttctgtattccatacattatttattcctcctctagcctagctacctgtctgaaacgctgtactgtgtgtcgcaattttgtcacatgtacacagATCGCGATCAGAGATTGAGGAGGCATCCTGTCCAGCTGTTCCACTTCCATCCATCCATCCACCACCAGAGAAGAGCATACAGTAGTGCACCACTCATCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA