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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcgagcccagtcctagatccgatccctgcgggttcggaacttcggcgttagggtttgcttctgatctgtggggtttgtttggtttttctcttgccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATTAAGGAAAACCAAGAGAAAATTAAGCTCAACAAGCAGCTGCCCTACCTCG

Basic information

species Zea mays
transcript GRMZM2G032505_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032505_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g07630.1 (Oryza sativa), 3'ss of exon 1
--------------------------------------------------gtgagcgagcccagtcctagatccgatccctgcgggttcggaacttcggcgttagggttt-----gcttctgatctg--tggggtttgtttggtttttctcttgccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATTAAGGAAAACCAAGAGAAAATTAAGCTCAACAAGCAGCTGCCCTACCTCG
                                                       ||||     | | || | |   | | |  |  ||    ||| |   |||||||||      | ||||||| |  |||||||| ||| | | |  | |||  || |  |||| ||| |||||||||| ||| ||||| |||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||
gcaagcccgcctccgctctctctctctctcccctaaccctagatccccctccctccgaggtttttgccagttgcctcctccggtgaatctttgcttgga--ttagggtttccgggtcgtctgatcggtttggggttttttttggtgtgattttggtgcgc--agGATGAGCTGCAGCGGACCAACTTGGAGCTGGAATCGTTCAAGGAGAAGATTAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTTCCCTACCTCG

upper sequence: GRMZM2G032505_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA10G29250.1 (Glycine max), 3'ss of exon 1
-------------------------------gtgagc--gagcccagtcctagatccgatccctgcgggttcggaacttcggcgttagggtttgcttctgatctgtggggtttgtttggtttttctcttgccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATTAAGGAAAACCAAGAGAAAATTAAGCTCAACAAGCAGCTGCCCTACCTCG
                               || | |   | || | |||||      |  |   |   || |   |||| |  ||         ||  | | | ||   |||  |||  || | | | |  ||    |||| ||||||||| |||| ||  |||||||||| |||| |||||| ||||| ||||| || || ||||| ||||||||||| |||||| ||||||||||||
gtacaatctttttgttttttcttctgcttctgtaaccctaaccctaatcctatcgattacactatcttttttgctgcttccgtcttcttagcca-ttagggtttctgatttttaattgaattgtttttggtggc-tgaagGAAGAGTTGCAGAGGACCAATTTGGAGTTGGAATCGTACAAGGACAAGATCAAGGAGAATCAGGAGAAGATTAAGCTCAATAAGCAGTTGCCCTACCTCG

upper sequence: GRMZM2G032505_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA20G38030.1 (Glycine max), 3'ss of exon 1
-------------------------------------gtgagcgagcccagtcctagatccgatccctgcgggttcggaacttcggcgttagggtttgcttct-gatctgtggggtttgtttggtttttctcttgccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATTAAGGAAAACCAAGAGAAAATTAAGCTCAACAAGCAGCTGCCCTACCTCG
                                      |  |  | || |  ||||    ||||  |      ||     ||||  |  |    || ||   | |   |   |  |||  |||  || ||  | |   |    |||| ||||||||| |||| ||  |||| ||||| |||| |||||| ||||| ||||| || || ||||| ||||||||||| |||||| ||||||||||||
gtatactcttttctttctgtttcgtttttttccctgcttctgtaaccctaacccta---tcgattacactatcttttttccttcttccgttttcttagccattagggtttctgattttaattgaattgtccttcgtgac-tgaagGAAGAGTTGCAGAGGACCAATTTGGAATTGGAATCGTACAAGGACAAGATCAAGGAGAATCAGGAGAAGATTAAGCTCAATAAGCAGTTGCCCTACCTCG

upper sequence: GRMZM2G032505_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 1
gtgagcgagcccagtcctagatccgatccctgcgggttcggaacttcggcgttagggtt-tgcttctgatctgtggggtttgtttg------gtttttctcttgccgc-acccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATTAAGGAAAACCAAGAGAAAATTAAGCTCAACAAGCAGCTGCCCTACCTCG
               |  |  |  |||   |     |    | || || | ||   |||     |  ||| ||| |   ||| |        |||||||| |    |  |   |||| ||   |||  | || || || || |  || || | |||||||||||||||||| || || ||||| ||||| ||||||||||||||||| ||| | |
---------------ctcaactgagattgattgaattgaaaagctacgtctttcttgttgcaaattggatatgttgaaattgctcatcttgtgtttttctttgatggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGG

upper sequence: GRMZM2G032505_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 1
gtgagcgagcccagtcctagatccgatccctgcgggttcggaactt-cggcgttagggtttgc--ttctgatctgtggggtttgtttggtttttctcttgccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATTAAGGAAAACCAAGAGAAAATTAAGCTCAACAAGCAGCTGCCCTACCTCG
      |   | | ||          || ||     |  |   ||| | | | || | |||||  || ||||   ||| | | ||   | | |  | |||        |||| ||||||||| |||||||| |||||| ||| || |  ||||||||||| ||||| || || ||||| || ||||||||||||||||| |||||| | |
------gtctctattctctctctttttctctttatatatgtgtctttccgtgatatgatttgcgattttgatgaatggtggtggt---ggtatggtgttga-------agGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATCAAGGAGAATCAGGAGAAGATCAAGCTCAACAAGCAGCTTCCCTACTTGG

upper sequence: GRMZM2G032505_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv05s0020g01180.t01 (Vitis vinifera), 3'ss of exon 2
gtgagcgagcccagtcctagatccgatccctgcgggttcggaacttcggcgttagggtttgcttctgatctgtggggtttgtttggtttttctcttgccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATTAAGGAAAACCAAGAGAAAATTAAGCTCAACAAGCAGCTGCCCTACCTCG
|| ||    | ||   |    ||  || |       ||     | |  | | | |   ||| ||  ||| | |      | |||  ||||| | || |  |    |||| ||||||||| | ||||| ||||||||||| |||||||| || || || ||||| || |||||||| || ||||||||||||||||| |||||||| |
gttagatctctcaacgccttgtcaaatgctca----tttaatccattagtgattga--ttgatt--gattttttt--cctttttccttttttttttcctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATAAAGGAGAATCAAGAGAAGATCAAGCTCAACAAGCAGCTACCCTACCTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78179300|gb|DV549673.1|DV549673
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211292087|gb|FL259244.1|FL259244
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211289941|gb|FL259222.1|FL259222
EST:     TATCATCCGGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: TATCATCC-GGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211294220|gb|FL259249.1|FL259249
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|47961752|gb|CN844461.1|CN844461
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211139388|gb|FL259181.1|FL259181
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|149062853|gb|EE157572.2|EE157572
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTACAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211289944|gb|FL259225.1|FL259225
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211139394|gb|FL259187.1|FL259187
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211140323|gb|FL259190.1|FL259190
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211287804|gb|FL259213.1|FL259213
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|21843229|gb|BQ703810.1|BQ703810
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211139389|gb|FL259182.1|FL259182
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211140327|gb|FL259194.1|FL259194
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211287796|gb|FL259205.1|FL259205
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|29130146|gb|CB380850.1|CB380850
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211138447|gb|FL259172.1|FL259172
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211292086|gb|FL259243.1|FL259243
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211140326|gb|FL259193.1|FL259193
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211068785|gb|FK950313.1|FK950313
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211289949|gb|FL259230.1|FL259230
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211289938|gb|FL259219.1|FL259219
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|60346168|gb|DN213141.1|DN213141
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211140330|gb|FL259197.1|FL259197
EST:     ATATCATCCGGGCCTCMCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211292081|gb|FL259238.1|FL259238
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|148979721|gb|EE026794.2|EE026794
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211292077|gb|FL259234.1|FL259234
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211287799|gb|FL259208.1|FL259208
EST:     ATATCAYCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211140324|gb|FL259191.1|FL259191
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211287801|gb|FL259210.1|FL259210
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211287794|gb|FL259203.1|FL259203
EST:     ATATCATCCGGGCCTCCCGCSTTCTTGACAACGAGATCCGTGTCCTCRAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211139393|gb|FL259186.1|FL259186
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211287805|gb|FL259214.1|FL259214
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|149077127|gb|EE165787.2|EE165787
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|30306963|gb|CD001636.1|CD001636
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211292078|gb|FL259235.1|FL259235
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211292082|gb|FL259239.1|FL259239
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCMGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCTTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211139382|gb|FL259175.1|FL259175
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211294221|gb|FL259250.1|FL259250
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211289948|gb|FL259229.1|FL259229
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211292085|gb|FL259242.1|FL259242
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211287806|gb|FL259215.1|FL259215
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211139383|gb|FL259176.1|FL259176
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211292083|gb|FL259240.1|FL259240
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211139391|gb|FL259184.1|FL259184
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211287807|gb|FL259216.1|FL259216
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGGAGTCGTTCAAGGAGAAGAT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGG-AGTCGTTCAAGGAGAAGAT
EST: gi|211139386|gb|FL259179.1|FL259179
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211294224|gb|FL259253.1|FL259253
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGWATGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGAT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAG-TTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGAT
EST: gi|211287808|gb|FL259217.1|FL259217
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211294222|gb|FL259251.1|FL259251
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211289943|gb|FL259224.1|FL259224
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211289939|gb|FL259220.1|FL259220
EST:     TATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGAT
genomic: TATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTG-TCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGAT
EST: gi|211289937|gb|FL259218.1|FL259218
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211139387|gb|FL259180.1|FL259180
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211287798|gb|FL259207.1|FL259207
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|6918347|gb|AW399877.1|AW399877
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|149108219|gb|EE292563.2|EE292563
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211140333|gb|FL259200.1|FL259200
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|149109720|gb|EE293507.2|EE293507
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211287803|gb|FL259212.1|FL259212
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211294219|gb|FL259248.1|FL259248
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211140335|gb|FL259202.1|FL259202
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211139380|gb|FL259173.1|FL259173
EST:     ATATCATCCGGGCCTCCSGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGG
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGG
EST: gi|211138446|gb|FL259171.1|FL259171
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211292089|gb|FL259246.1|FL259246
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211289950|gb|FL259231.1|FL259231
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211289945|gb|FL259226.1|FL259226
EST:     TATCATCCGGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCTTTCAAGGAGAAGATT
genomic: TATCATCC-GGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211140321|gb|FL259188.1|FL259188
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211289942|gb|FL259223.1|FL259223
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|149100563|gb|EE186648.2|EE186648
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211287800|gb|FL259209.1|FL259209
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211139392|gb|FL259185.1|FL259185
EST:     ATATCATCCGGGCSTCCSGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211139384|gb|FL259177.1|FL259177
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|149096589|gb|EE182348.2|EE182348
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211140325|gb|FL259192.1|FL259192
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211287802|gb|FL259211.1|FL259211
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|71314217|gb|DR793724.1|DR793724
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211292090|gb|FL259247.1|FL259247
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|26557803|gb|CA830038.1|CA830038
EST:     TATCATCCGGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: TATCATCC-GGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211139390|gb|FL259183.1|FL259183
EST:     ATATCATCCGGGCCTCCCGMCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211140332|gb|FL259199.1|FL259199
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCATCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211289946|gb|FL259227.1|FL259227
EST:     ATATCATCCGGGCCTCCCGCMTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAG
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAG
EST: gi|149085416|gb|EE174922.2|EE174922
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|74241694|gb|DT649608.1|DT649608
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|148951330|gb|EC897040.2|EC897040
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|149101527|gb|EE187650.2|EE187650
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211140334|gb|FL259201.1|FL259201
EST:     TATCATCCGGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: TATCATCC-GGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211289940|gb|FL259221.1|FL259221
EST:     ATATCATCCGGGCCTCMCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|211140329|gb|FL259196.1|FL259196
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
EST: gi|101396024|gb|EB819941.1|EB819941
EST:     ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAG                         GACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT
genomic: ATATCATCCGGGCCTCCCGCCTTCTTGACAACGAGATCCGTGTCCTCAAGgtgagcgagc ... ccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagggtttgcttctgatctgtggggtttgtttggtttttctcttgccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATTAAGGAAAACCAAGAGAAAATTAAGCTCAACAAGCAGCTGCCCTACCTCG
          ttctgat  putative branch site (score: 3)
                                  tttttctcttgccgc  putative PPT
                         tttgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagcgagcccagtcctagatccgatccctgcgggttcggaacttcggcgttagggtttgcttctgatctgtggggtttgtttggtttttctcttgccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATTAAGGAAAACCAAGAGAAAATTAAGCTCAACAAGCAGCTGCCCTACCTCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC