1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgtgccgtccgtcgcctcagtctcttcccgccgccgcttcggagactaacttctctccctttgttgttctctcttcgcagATACCGCAGATCCGTCGTCCGGTGAGTGGAAGCCGCACGAACCCATGGCCTCCGGCGAGCTTGCCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGG
species | Zea mays |
transcript | GRMZM2G032315_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AACCCTAGAATCCACCCTGCCGCCTCACCGCCTCTCTCAATCTG ATACCGCAGATCCGTCGTCCGGTGAGTGGAAGCCGCACGAACCCATGGCCTEST: gi|84980713|gb|DW531062.1|DW531062
genomic: AACCCTAGAATCCACCCTGCCGCCTCACCGCCTCTCTCAATCTGgtatgtgccg ... ctcttcgcagATACCGCAGATCCGTCGTCCGGTGAGTGGAAGCCGCACGAACCCATGGCCT
EST: CGCCTCACCGCCTCTCTC--TCTG AGACCGCAGATCCGTTGTCCGGTGAGTGGAAGCCGCACGAACCCATGGCCTEST: gi|211232580|gb|FK974101.1|FK974101
genomic: CGCCTCACCGCCTCTCTCAATCTGgtatgtgccg ... ctcttcgcagATACCGCAGATCCGTCGTCCGGTGAGTGGAAGCCGCACGAACCCATGGCCT
EST: TAGAATCCACCCTGCCGCCTCACCGCCTCTCTCAATCTG ATACCGCAGATCCGTCGTCCGGTGAGTGGAAGCCGCACGAACCCATGGCCTEST: gi|37394086|gb|CF634313.1|CF634313
genomic: TAGAATCCACCCTGCCGCCTCACCGCCTCTCTCAATCTGgtatgtgccg ... ctcttcgcagATACCGCAGATCCGTCGTCCGGTGAGTGGAAGCCGCACGAACCCATGGCCT
EST: CGCCTCTCTCACTCTG AGACCGCAGATCCGTTGTCCGGTGAGTGGAAGCCGCACGAACCCATGGCCTEST: gi|211369677|gb|FK974187.1|FK974187
genomic: CGCCTCTCTCAATCTGgtatgtgccg ... ctcttcgcagATACCGCAGATCCGTCGTCCGGTGAGTGGAAGCCGCACGAACCCATGGCCT
EST: CTAGAATCCACCCTGCCGCCTCACCGCCTCTCTCAATCTG ATACCGCAGATCCGTCGTCCGGTGAGTGGAAGCCGCACGAACCCATGGCCTEST: gi|211232579|gb|FK974100.1|FK974100
genomic: CTAGAATCCACCCTGCCGCCTCACCGCCTCTCTCAATCTGgtatgtgccg ... ctcttcgcagATACCGCAGATCCGTCGTCCGGTGAGTGGAAGCCGCACGAACCCATGGCCT
EST: CCACCCTGCCGCCTCACCGCCTCTCTCACTCTG AGACCGCAGATCCGTTGTCCGGTGAGTGGAAGCCGCACGAACCCATGGCCTEST: gi|211369682|gb|FK974192.1|FK974192
genomic: CCACCCTGCCGCCTCACCGCCTCTCTCAATCTGgtatgtgccg ... ctcttcgcagATACCGCAGATCCGTCGTCCGGTGAGTGGAAGCCGCACGAACCCATGGCCT
EST: TAGAAGCCACCCTGCCGCCTCACCGCCTCTCTCACTCTG AGACCGCAGATCCGTTGTCCGGTGAGTGGAAGCCGCACGAACCCATGGCCT
genomic: TAGAATCCACCCTGCCGCCTCACCGCCTCTCTCAATCTGgtatgtgccg ... ctcttcgcagATACCGCAGATCCGTCGTCCGGTGAGTGGAAGCCGCACGAACCCATGGCCT
tcccgccgccgcttcggagactaacttctctccctttgttgttctctcttcgcagATACCGCAGATCCGTCGTCCGGTGAGTGGAAGCCGCACGAACCCATGGCCTCCGGCGAGCTTGCCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGG
gactaac putative branch site (score: 1102)
ctaacttctctccctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgccgtccgtcgcctcagtctcttcccgccgccgcttcggagactaacttctctccctttgttgttctctcttcgcagATACCGCAGATCCGTCGTCCGGTGAGTGGAAGCCGCACGAACCCATGGCCTCCGGCGAGCTTGCCTGCACCTACGCCGCTCTCATCCTCAGCGACGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT