Sequence
atgc intronic sequence ATGC exonic sequencegtaagctcctatttttcacaaacttgatcagtgatcacccacactggccacctccattattatctccatctttatccttgtccttagGAGGAGTTGGAGTATTCTACATCTTCAGAAAGAATGAGGTCAAGAGCAGAGATAGTGAGACTTGGACCTGATCCCGGCCCATCCTCACCGGCAACTGCAG
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149084745|gb|EE174240.2|EE174240EST: ATCTAATCACCTACATAACATAAGCAGCTTGTGGTGATGCTGCATGGGAG GAGGAGTTGGAGTATTCTACATCTTCAGAAAGAATGAGGTCAAGAGCAGAG
genomic: ATCTAATCACCTACATAACATAAGCAGCTTGTGGTGATGCTGCATGGGAGgtaagctcct ... ttgtccttagGAGGAGTTGGAGTATTCTACATCTTCAGAAAGAATGAGGTCAAGAGCAGAG
EST:
gi|149102004|gb|EE287500.2|EE287500EST: ATCTAATCACCTACATAACATAAGCAGCTTGTGGTGATGCTGCATGGGAG GAGGAGTTGGAGTATTCTACATCTTCAGAAAGAATGAGGTCAAGAGCAGAG
genomic: ATCTAATCACCTACATAACATAAGCAGCTTGTGGTGATGCTGCATGGGAGgtaagctcct ... ttgtccttagGAGGAGTTGGAGTATTCTACATCTTCAGAAAGAATGAGGTCAAGAGCAGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatcacccacactggccacctccattattatctccatctttatccttgtccttagGAGGAGTTGGAGTATTCTACATCTTCAGAAAGAATGAGGTCAAGAGCAGAGATAGTGAGACTTGGACCTGATCCCGGCCCATCCTCACCGGCAACTGCAG
tctccatctttatcct CT-rich tract
attattatct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagctcctatttttcacaaacttgatcagtgatcacccacactggccacctccattattatctccatctttatccttgtccttagGAGGAGTTGGAGTATTCTACATCTTCAGAAAGAATGAGGTCAAGAGCAGAGATAGTGAGACTTGGACCTGATCCCGGCCCATCCTCACCGGCAACTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG