1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atatgcaaactactcttgtctgtactgaacatttgtggacttcgttggcaattgtgtaatgcatcattaatgaatcatgcgacaaattttgtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAAGGTATTTGGAGGATCCCTGGACAATGTGAAAGGCTGCACTGATCAGGTG
species | Zea mays |
transcript | GRMZM2G031825_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAAEST: gi|211295987|gb|FL012313.1|FL012313
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAAEST: gi|34391313|gb|CF384541.1|CF384541
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAAEST: gi|51592666|gb|CV071812.1|CV071812
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATTNNCACTG GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAAEST: gi|32803246|gb|CD955482.1|CD955482
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
EST: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTG GGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
genomic: GGCGAGGTCGGCGCCTACGTCGACTGCGTTCTCACCACCCATCACCACTGgtataccata ... gtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAA
tggcaattgtgtaatgcatcattaatgaatcatgcgacaaattttgtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAAGGTATTTGGAGGATCCCTGGACAATGTGAAAGGCTGCACTGATCAGGTG
cattaat putative branch site (score: 3)
attaatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgcaaactactcttgtctgtactgaacatttgtggacttcgttggcaattgtgtaatgcatcattaatgaatcatgcgacaaattttgtggttttagGGATCATGCTGGTGGCAATGAGAAGATGAGGCTGCAGGTGCCAGGGATAAAGGTATTTGGAGGATCCCTGGACAATGTGAAAGGCTGCACTGATCAGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT