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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggccgccataagccttttcttttctcggatttttctccctcctcctcagctgtcactaaggtgctgggttggtttcgtcagAGGGGAGAGAACGGTCAAGAAGCTGCGGCTGTCCAAGGCGCTGACGATCGCGGAGGGGACCACGGTCTCGGAGGCGTGCCGACGGATGGCGGCGAGGCGG

Basic information

species Zea mays
transcript GRMZM2G031609_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031609_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g06930.1 (Oryza sativa), 3'ss of exon 1
---gtaaggccgccataagccttttcttttctcggatttttctccctcctcctcagctgtcactaaggtgctgggttggtttcgtcagAGGGGAGAGAACGGTCAAGAAGCTGCGGCTGTCCAAGGCGCTGACGATCGCGGAGGGGACCACGGTCTCGGAGGCGTGCCGACGGATGGCGGCGAGGCGG
     |||   |||     |  | ||| | ||||     ||    |    |      ||    |    | ||   |   |||| ||||||||||||| ||||| ||||||||||||||| | |||||| |||||||| |||||||||| |||||  ||||||| ||||  ||||||||||||||| ||
gtaccaagattgcctctctctctctctctcctcgccgcctttgatccttacagagattggatttttttttct---tctttttcttcagAGGGGAGAGGACGGTGAAGAAGCTGCGGCTGACGAAGGCGGTGACGATCCCGGAGGGGACGACGGTGGCGGAGGCTTGCCAGCGGATGGCGGCGAGGAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatttttctccctcctcctcagctgtcactaaggtgctgggttggtttcgtcagAGGGGAGAGAACGGTCAAGAAGCTGCGGCTGTCCAAGGCGCTGACGATCGCGGAGGGGACCACGGTCTCGGAGGCGTGCCGACGGATGGCGGCGAGGCGG
                                              tttcgtc  CT-rich tract