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...tatttttatctcagtggtattatgctccagaagaaaacaaagatttagttcactgtatctatggtatggacgaggaatttatatgctttttcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGAGCTCCAAATGGCCCGATCTTCCTATACATCTGTGGAGAATCTACGTGCA
species | Zea mays |
transcript | GRMZM2G031572_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACG GACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGAEST: gi|71441298|gb|DR822348.1|DR822348
genomic: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACGgtatctactg ... tcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
EST: CTTCAACCCGACG GACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGAEST: gi|211469987|gb|FL213486.1|FL213486
genomic: CTTCAACCCGACGgtatctactg ... tcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
EST: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACG GACCATCGGCAATTCAAACAGCGGTACTACGAATTTEST: gi|211467472|gb|FL213483.1|FL213483
genomic: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACGgtatctactg ... tcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTT
EST: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACG GACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGAEST: gi|31357650|gb|CD442007.1|CD442007
genomic: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACGgtatctactg ... tcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
EST: CTGGATGAACCAAACCCTGGATCACTTCAACCCGACG GACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGAEST: gi|211467470|gb|FL213481.1|FL213481
genomic: CTGGATGAACCAAACCCTGGATCACTTCAACCCGACGgtatctactg ... tcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
EST: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACG GACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGAEST: gi|93011649|gb|EB637169.1|EB637169
genomic: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACGgtatctactg ... tcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
EST: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACG GACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGAEST: gi|211493121|gb|FL031303.1|FL031303
genomic: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACGgtatctactg ... tcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
EST: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACG GACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGAEST: gi|211493120|gb|FL031302.1|FL031302
genomic: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACGgtatctactg ... tcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
EST: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACG GACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGAEST: gi|211469990|gb|FL213489.1|FL213489
genomic: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACGgtatctactg ... tcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
EST: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACG GACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
genomic: CTCGGGAGGAGCACTGGATGAACCAAACCCTGGATCACTTCAACCCGACGgtatctactg ... tcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGA
tagttcactgtatctatggtatggacgaggaatttatatgctttttcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGAGCTCCAAATGGCCCGATCTTCCTATACATCTGTGGAGAATCTACGTGCA
tgctttttc CT-rich tract
aatttatatgcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttttatctcagtggtattatgctccagaagaaaacaaagatttagttcactgtatctatggtatggacgaggaatttatatgctttttcatatgcagGACCATCGGCAATTCAAACAGCGGTACTACGAATTTCTCGACTACTACCGAGCTCCAAATGGCCCGATCTTCCTATACATCTGTGGAGAATCTACGTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - -gctccag
- - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - ctgtatc