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gtaagcaagctgagcaatctcttactcacctttgtatttttcagtgcaaagaatctgcatgtaattgagcttttgcttttggtcagGGATGGCAAGAGTCGGCAGTTTGCATTCATTGGTTACAGAACCAATGAAGAGGCAGATGAGGCACTCAAGTATTTCAACAATACATACATCGACACTTGT
species | Zea mays |
transcript | GRMZM2G031529_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGTTCTCGCGGAAGGGCGAGGTCACCGACGCCAAGGTCATCCGAACAAA GGATGGCAAGAGTCGGCAGTTTGCATTCATTGGTTACAGAACCAATGAAGAEST: gi|32908510|gb|CF013323.1|CF013323
genomic: GTGTTCTCGCGGAAGGGCGAGGTCACCGACGCCAAGGTCATCCGAACAAAgtaagcaagc ... ttttggtcagGGATGGCAAGAGTCGGCAGTTTGCATTCATTGGTTACAGAACCAATGAAGA
EST: GTTCTCGCGGAAGGGCGAGGTCACCGACGCCAAGGTCATCCGAACAAA GGATGGCAAGAGTCGGCAGTTTGCATTCATTGGTTACAGAACCAATGAAGAEST: gi|89248327|gb|DY620113.1|DY620113
genomic: GTTCTCGCGGAAGGGCGAGGTCACCGACGCCAAGGTCATCCGAACAAAgtaagcaagc ... ttttggtcagGGATGGCAAGAGTCGGCAGTTTGCATTCATTGGTTACAGAACCAATGAAGA
EST: GTGTTCTCGCGGAAGGGCGAGGTCACCGACGCCAAGGTCATCCGAACAAA GGATGGCAAGAGTCGGCAGTTTGCATTCATTGGTTACAGAACCAATGAAGA
genomic: GTGTTCTCGCGGAAGGGCGAGGTCACCGACGCCAAGGTCATCCGAACAAAgtaagcaagc ... ttttggtcagGGATGGCAAGAGTCGGCAGTTTGCATTCATTGGTTACAGAACCAATGAAGA
ttgtatttttcagtgcaaagaatctgcatgtaattgagcttttgcttttggtcagGGATGGCAAGAGTCGGCAGTTTGCATTCATTGGTTACAGAACCAATGAAGAGGCAGATGAGGCACTCAAGTATTTCAACAATACATACATCGACACTTGT
cttttgctttt CT-rich tract
atgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaagctgagcaatctcttactcacctttgtatttttcagtgcaaagaatctgcatgtaattgagcttttgcttttggtcagGGATGGCAAGAGTCGGCAGTTTGCATTCATTGGTTACAGAACCAATGAAGAGGCAGATGAGGCACTCAAGTATTTCAACAATACATACATCGACACTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG