1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagctccttctgcggccccaccgtctcgttcgctgcgcttcctttgctgattagtcttattccacgtcggatggcagGGCTTGCGGGCAGGCTCCTGTCCACCACGGCGTCGGCGGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG
species | Zea mays |
transcript | GRMZM2G031479_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTCGGCGCCTTCTTCCCATCCGCGTTCGCCACGTCCTCGTACCCCGCAA GGCTTGCGGGCAGGCTCCTGTCCACCACGGCGTCGGCGGTGGCCAAGCAGCEST: gi|91056572|gb|EB166990.1|EB166990
genomic: GTTCGGCGCCTTCTTCCCATCCGCGTTCGCCACGTCCTCGTACCCCGCAAgtgagctcct ... cggatggcagGGCTTGCGGGCAGGCTCCTGTCCACCACGGCGTCGGCGGTGGCCAAGCAGC
EST: GTTCGGCGCCTTCTTCCCATCCGCGTTCGCCACGTCCTCGTACCCCGCAA GGCTTGCGGGCAGGCTCCTGTCCACCACGGCGTCGGCGGTGGCCAAGCAGCEST: gi|71424156|gb|DR806253.1|DR806253
genomic: GTTCGGCGCCTTCTTCCCATCCGCGTTCGCCACGTCCTCGTACCCCGCAAgtgagctcct ... cggatggcagGGCTTGCGGGCAGGCTCCTGTCCACCACGGCGTCGGCGGTGGCCAAGCAGC
EST: GTTCGGCGCCTTCTTCCCATCCGCGTTCGCCACGTCCTCGTACCCCGCAA GGCTTGCGGGCAGGCTCCTGTCCACCACGGCGTCGGCGGTGGCCAAGCAGCEST: gi|148932019|gb|EC875322.2|EC875322
genomic: GTTCGGCGCCTTCTTCCCATCCGCGTTCGCCACGTCCTCGTACCCCGCAAgtgagctcct ... cggatggcagGGCTTGCGGGCAGGCTCCTGTCCACCACGGCGTCGGCGGTGGCCAAGCAGC
EST: GTTCGGCGCCTTCTTCCCATCCGCGTTCGCCACGTCCTCGTACCCCGCAA GGCTTGCGGGCAGGCTCCTGTCCACCACGGCGTCGGCGGTGGCCAAGCAGC
genomic: GTTCGGCGCCTTCTTCCCATCCGCGTTCGCCACGTCCTCGTACCCCGCAAgtgagctcct ... cggatggcagGGCTTGCGGGCAGGCTCCTGTCCACCACGGCGTCGGCGGTGGCCAAGCAGC
gtctcgttcgctgcgcttcctttgctgattagtcttattccacgtcggatggcagGGCTTGCGGGCAGGCTCCTGTCCACCACGGCGTCGGCGGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG
tgctgat putative branch site (score: 13)
tcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctccttctgcggccccaccgtctcgttcgctgcgcttcctttgctgattagtcttattccacgtcggatggcagGGCTTGCGGGCAGGCTCCTGTCCACCACGGCGTCGGCGGTGGCCAAGCAGCTGTGGTCGCTCAAATCGGCCGCCACCAAGACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG