1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cagacaaaatttgcccttttcctcctgtagttccgctcatgtgcagcttcaggtccctgagttggctaacgtaccttttcttttttcctttcttgcgcagGTAAATAAAGCGGTTGGGATAAGTTTGTAAATTGCTTTGTCAAACCAGGACAAGGTTCTGAATCAGGGGCAGGCAACCTCTCGCGTAGCCTGTTCATCTT
species | Zea mays |
transcript | GRMZM2G031400_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGGAGTTCTCCTTCAATGGGGTTTGATGCGAGGTGCTGGTGCTGCCAAG GTAAATAAAGCGGTTGGGATAAGTTTGTAAATTGCTTTGTCAAACCAGGACEST: gi|211266639|gb|FL405763.1|FL405763
genomic: ATGGAGTTCTCCTTCAATGGGGTTTGATGCGAGGTGCTGGTGCTGCCAAGgtgatttcct ... tcttgcgcagGTAAATAAAGCGGTTGGGATAAGTTTGTAAATTGCTTTGTCAAACCAGGAC
EST: ATGGAGTTCTCCTTCAATGGGGTTTGATGCGAGGTGCTGGTGCTGCCAAG GTAAATAAAGCGGTTGGGATAAGTTTGTAAATTGCTTTGTCAAACCAGGACEST: gi|71771463|gb|DR969400.1|DR969400
genomic: ATGGAGTTCTCCTTCAATGGGGTTTGATGCGAGGTGCTGGTGCTGCCAAGgtgatttcct ... tcttgcgcagGTAAATAAAGCGGTTGGGATAAGTTTGTAAATTGCTTTGTCAAACCAGGAC
EST: ATGGAGTTCTCCTTCAATGGGGTTTGATGCGAGGTGCTGGTGCTGCCAAG GTAAATAAAGCGGTTGGGATAAGTTTGTAAATTGCTTTGTCAAACCAGGACEST: gi|211161831|gb|FL430192.1|FL430192
genomic: ATGGAGTTCTCCTTCAATGGGGTTTGATGCGAGGTGCTGGTGCTGCCAAGgtgatttcct ... tcttgcgcagGTAAATAAAGCGGTTGGGATAAGTTTGTAAATTGCTTTGTCAAACCAGGAC
EST: ATGGAGTTCTCCTTCAATGGGGTTTGATGCGAGGTGCTGGTGCTGCCAAG GTAAATAAAGCGGTTGGGATAAGTTTGTAAATTGCTTTGTCAAACCAGGAC
genomic: ATGGAGTTCTCCTTCAATGGGGTTTGATGCGAGGTGCTGGTGCTGCCAAGgtgatttcct ... tcttgcgcagGTAAATAAAGCGGTTGGGATAAGTTTGTAAATTGCTTTGTCAAACCAGGAC
gcttcaggtccctgagttggctaacgtaccttttcttttttcctttcttgcgcagGTAAATAAAGCGGTTGGGATAAGTTTGTAAATTGCTTTGTCAAACCAGGACAAGGTTCTGAATCAGGGGCAGGCAACCTCTCGCGTAGCCTGTTCATCTT
ggctaac putative branch site (score: 27)
ctaacgtaccttttct CT-rich tract
ttttctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagacaaaatttgcccttttcctcctgtagttccgctcatgtgcagcttcaggtccctgagttggctaacgtaccttttcttttttcctttcttgcgcagGTAAATAAAGCGGTTGGGATAAGTTTGTAAATTGCTTTGTCAAACCAGGACAAGGTTCTGAATCAGGGGCAGGCAACCTCTCGCGTAGCCTGTTCATCTT
-agacaaa
- - - - - -tgccctt
- - - - - - - - - - cctcctg
- - - - - - - - - - - - - - - - - gctcatg
- - - - - - - - - - - - - - - - - - - - - - -gcttcag