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...atatgcttgttaatttgttctttaatagtgacttaatatattgctttagctgaacctcatataaattgtgtgattaatagtaccttctcagcctttgtagGTATTTATCTGAGGGAAGAAGAAACTATACAATTCATCATGTCAGGAGGGTCGTCTGAATCTTCCCCGTTATCTGGACAAAATAGCCTTAGTTCTCTATC
species | Zea mays |
transcript | GRMZM2G031107_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGTTCTCCGCTCTTGGTCTTGGGTGATCGCCGGCGGTACTTGTAGCGGG GTATTTATCTGAGGGAAGAAGAAACTATACAATTCATCATGTCAGGAGGGTEST: gi|78119964|gb|DV538348.1|DV538348
genomic: CTGTTCTCCGCTCTTGGTCTTGGGTGATCGCCGGCGGTACTTGTAGCGGGgtaagcgccg ... gcctttgtagGTATTTATCTGAGGGAAGAAGAAACTATACAATTCATCATGTCAGGAGGGT
EST: CTGTTCTCCGCTCTTGGTCTTGGGTGATCGCCGGCGGTACTTGTAGCGGGCCTTTGTAG
genomic: CTGTTCTCCGCTCTTGGTCTTGGGTGATCGCCGGCGGTACTTGTAGC--G-----G--Ggtaagcgccg ... gc
ttagctgaacctcatataaattgtgtgattaatagtaccttctcagcctttgtagGTATTTATCTGAGGGAAGAAGAAACTATACAATTCATCATGTCAGGAGGGTCGTCTGAATCTTCCCCGTTATCTGGACAAAATAGCCTTAGTTCTCTATC
gattaat putative branch site (score: 127)
ccttctcagccttt putative PPT
atataaattgtgtgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgcttgttaatttgttctttaatagtgacttaatatattgctttagctgaacctcatataaattgtgtgattaatagtaccttctcagcctttgtagGTATTTATCTGAGGGAAGAAGAAACTATACAATTCATCATGTCAGGAGGGTCGTCTGAATCTTCCCCGTTATCTGGACAAAATAGCCTTAGTTCTCTATC
- -tgcttgt
- - - - - - - - - - - - - - - - - - - - ttgcttt
- - - - - - - - - - - - - - - - - - - - - - - - gctgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgatt