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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacacatcctgcttatccagctgttatttgaatcttatatcttgccattgactggttatgtggccatgagacacttttactaaatcataccaactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCACACACTCTTCATCATAGGCCCAGGCAATATTTGTGTTAATCTCAGGGAC

Basic information

species Zea mays
transcript GRMZM2G030902_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211347523|gb|FL007072.1|FL007072
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|148936779|gb|EC880917.2|EC880917
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|149104347|gb|EE289792.2|EE289792
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|211347524|gb|FL007073.1|FL007073
EST:     GAGTGCCGCCG-CCGTTTCCATGTTTTTTCCTTCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|31664299|gb|CD573024.1|CD573024
EST:     GAG-GCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|71769697|gb|DR967634.1|DR967634
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|211345125|gb|FL007061.1|FL007061
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTATTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|148955713|gb|EC901400.2|EC901400
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|211345133|gb|FL007069.1|FL007069
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|87156149|gb|DY400938.1|DY400938
EST:     GAGTGCCGCCGCCCGTTTCCATGTATTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|211345132|gb|FL007068.1|FL007068
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|149096474|gb|EE182216.2|EE182216
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|211345126|gb|FL007062.1|FL007062
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|149000018|gb|EE037116.2|EE037116
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|211345131|gb|FL007067.1|FL007067
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|211345123|gb|FL007059.1|FL007059
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|6564152|gb|AW231774.1|AW231774
EST:     GAGTGCTGCCGCCCGTTTCCATGTATTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAGGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|149104935|gb|EE290405.2|EE290405
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|211345130|gb|FL007066.1|FL007066
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|26558833|gb|CA831068.1|CA831068
EST:     GAGTGCCGCCGCCCGTTTCCATGTATTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|22473110|gb|BU037590.1|BU037590
EST:     GAGTGCCGCCGCCCGTTTCCATGTATTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGGGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|71304925|gb|DR788593.1|DR788593
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|211345135|gb|FL007071.1|FL007071
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|211345122|gb|FL007058.1|FL007058
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|31557986|gb|CD527198.1|CD527198
EST:     GAG-GCCGCCGCCCGTTTCCATG-TTTTTCCGCCGATTAG-GTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|211345128|gb|FL007064.1|FL007064
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|32919564|gb|CF024376.1|CF024376
EST:     GAGTGCTGCCGCCCGTTTCCATGTATTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|149080743|gb|EE169805.2|EE169805
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|9952229|gb|BE638812.1|BE638812
EST:     TTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: TTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|13558465|gb|BG549821.1|BG549821
EST:     CCGCCGATTAGTGTCCACCAG                         ATCTAGCTGAAGGCTGGTAACTTGACGC-AGGCTGTTCAAGAAATTTAAGC
genomic: CCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAG-TGAAGGCTGGTAACTTGACGCAAGG-TGTTCAAGAAATTTAAGC
EST: gi|211345134|gb|FL007070.1|FL007070
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|211345127|gb|FL007063.1|FL007063
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTTGGTAACTTTGACGCAAGGTGTTCAAGAAATTTAAGC
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGC-TGGTAAC-TTGACGCAAGGTGTTCAAGAAATTTAAGC
EST: gi|60350487|gb|DN217460.1|DN217460
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
EST: gi|211345129|gb|FL007065.1|FL007065
EST:     GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAG                         ATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA
genomic: GAGTGCCGCCGCCCGTTTCCATGTTTTTTCCGCCGATTAGTGTCCACCAGgtacgcctct ... caactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattgactggttatgtggccatgagacacttttactaaatcataccaactttcagATCTAGTGAAGGCTGGTAACTTGACGCAAGGTGTTCAAGAAATTTAAGCCACACACTCTTCATCATAGGCCCAGGCAATATTTGTGTTAATCTCAGGGAC
                                tactaaa  putative branch site (score: 1)
                                                ctttc  putative PPT
                             ttttactaaatcata  TA-rich tract