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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataaaatagtgctaggtgttcatgctatttggtaaactatttttctccatctcttatagtttattctgttcttatagatgctttacttgtttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAAAAGATTGGTTTCTCGTCTGTTTCACCACAACAAAGTGATGATGAGGTTA

Basic information

species Zea mays
transcript GRMZM2G030312_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148933325|gb|EC876982.2|EC876982
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|211410293|gb|FL367092.1|FL367092
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAA-ATTTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTT-GAATCATCATTTCAGATACTCAACCAGCATTTTTCA
EST: gi|50323998|gb|CO519124.1|CO519124
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|89758965|gb|DY687943.1|DY687943
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|94478496|gb|EB707454.1|EB707454
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|211491894|gb|FL325733.1|FL325733
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|28930930|gb|CB334291.1|CB334291
EST:     TGGCAGCGGCGGCCG-GGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|211436102|gb|FL365037.1|FL365037
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|71766863|gb|DR964800.1|DR964800
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|148938639|gb|EC882972.2|EC882972
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|78116030|gb|DV534418.1|DV534418
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|148995403|gb|EE034608.2|EE034608
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|211004007|gb|FL317935.1|FL317935
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|101382862|gb|EB813485.1|EB813485
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|211362581|gb|FL351446.1|FL351446
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAA-ATTTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTT-GAATCATCATTTCAGATACTCAACCAGCATTTTTCA
EST: gi|94478060|gb|EB707018.1|EB707018
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|211007163|gb|FL335897.1|FL335897
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAA-ATTTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTT-GAATCATCATTTCAGATACTCAACCAGCATTTTTCA
EST: gi|71770780|gb|DR968717.1|DR968717
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|89760660|gb|DY688984.1|DY688984
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|211085848|gb|FL313539.1|FL313539
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|211117480|gb|FL364799.1|FL364799
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAA-ATTTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTT-GAATCATCATTTCAGATACTCAACCAGCATTTTTCA
EST: gi|76926865|gb|DV171021.1|DV171021
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|101387368|gb|EB815700.1|EB815700
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|211520216|gb|FL353890.1|FL353890
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|211393521|gb|FL317897.1|FL317897
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|211412055|gb|FL337223.1|FL337223
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAA-ATTTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTT-GAATCATCATTTCAGATACTCAACCAGCATTTTTCA
EST: gi|149077493|gb|EE166189.2|EE166189
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|91873051|gb|EB403008.1|EB403008
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|211284677|gb|FL309995.1|FL309995
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAA-ATTTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTT-GAATCATCATTTCAGATACTCAACCAGCATTTTTCA
EST: gi|88757877|gb|DY542018.1|DY542018
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|211092010|gb|FL367302.1|FL367302
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCTAAA-ATTTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTT-GAATCATCATTTCAGATACTCAACCAGCATTTTTCA
EST: gi|93013418|gb|EB638938.1|EB638938
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|211324643|gb|FL342466.1|FL342466
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAA-ATTTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTT-GAATCATCATTTCAGATACTCAACCAGCATTTTTCA
EST: gi|211467862|gb|FL342140.1|FL342140
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAA-ATTTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTT-GAATCATCATTTCAGATACTCAACCAGCATTTTTCA
EST: gi|211125338|gb|FL355515.1|FL355515
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAA-ATTTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTT-GAATCATCATTTCAGATACTCAACCAGCATTTTTCA
EST: gi|71757784|gb|DR955721.1|DR955721
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|211489428|gb|FL342617.1|FL342617
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|71434759|gb|DR815809.1|DR815809
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|28873855|gb|CB329788.1|CB329788
EST:     TGGCAGCGG-GGCCG-GGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|211372254|gb|FL314692.1|FL314692
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAA-ATTTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTT-GAATCATCATTTCAGATACTCAACCAGCATTTTTCA
EST: gi|211283605|gb|FL349540.1|FL349540
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAA-ATTTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTT-GAATCATCATTTCAGATACTCAACCAGCATTTTTCA
EST: gi|78075537|gb|DV503971.1|DV503971
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|211185843|gb|FL326890.1|FL326890
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAA-ATTTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTT-GAATCATCATTTCAGATACTCAACCAGCATTTTTCA
EST: gi|149063793|gb|EE286381.2|EE286381
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|89251989|gb|DY623775.1|DY623775
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|101395854|gb|EB819854.1|EB819854
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
EST: gi|76934354|gb|DV173837.1|DV173837
EST:     TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGG                         GTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA
genomic: TGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 78

CGCCGGCGCAGCGGCTGCGTCATCAGCCGCGGGGCGGCACCGGGGGGCCCTGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAAAAGATTGGTTTCTCGTCTGTTTCACCACAACAAAGTGATGATGAGGTTA


Block sizes: 48 (upstream exon), 47 (downstream exon)
Score: 24

CGCCGGCGCAGCGGCTGCGTCATCAGCCGCGGGGCGGCACCGGGGGGCCCTGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAAAAGATTGGTTTCTCGTCTGTTTCACCACAACAAAGTGATGATGAGGTTA


Block sizes: 48 (upstream exon), 47 (downstream exon)
Score: 38

CGCCGGCGCAGCGGCTGCGTCATCAGCCGCGGGGCGGCACCGGGGGGCCCTGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAAAAGATTGGTTTCTCGTCTGTTTCACCACAACAAAGTGATGATGAGGTTA


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 67

CGCCGGCGCAGCGGCTGCGTCATCAGCCGCGGGGCGGCACCGGGGGGCCCTGGCAGCGGCGGCCGTGGAGCAGTTCGCCGGTTCCTCCCTGCCTGTCGGGgtgagatttc ... ttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAAAAGATTGGTTTCTCGTCTGTTTCACCACAACAAAGTGATGATGAGGTTA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccatctcttatagtttattctgttcttatagatgctttacttgtttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAAAAGATTGGTTTCTCGTCTGTTTCACCACAACAAAGTGATGATGAGGTTA
                                   ctttacttgttttt  CT-rich tract
      tcttatagtttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ataaaatagtgctaggtgttcatgctatttggtaaactatttttctccatctcttatagtttattctgttcttatagatgctttacttgtttttgtccagGTTCCAAATATTTTGAATCATCATTTCAGATACTCAACCAGCATTTTTCAAAAGATTGGTTTCTCGTCTGTTTCACCACAACAAAGTGATGATGAGGTTA

- - - - gtgctag
- - - - - - - - - ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgctt