Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgatttgatcagacagtttcatatctctttttatgtgtgtacttgtcaatgcccttttttctatgcgtcctcaacttttacttgtttaaaaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGCAAGAAAA

Basic information

species Zea mays
transcript GRMZM2G030167_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030167_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g46980.1 (Oryza sativa), 3'ss of exon 1
gtgatttgatcagacagtttcatatctctttttatgtgtgtacttgtcaatgcccttttttctatgcgtcctcaactt---ttacttgtttaaaa-acttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGCAAGAAAA
    |   | |||| |      |||  |||| |   ||   ||   |   |  || || |  | | | |||  |  ||   ||| |||| |||     |||||||| ||||| ||||||||| | || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |||||  | |||||||
----tcaaaccagataaaccactatgcctttatcattgctgacagttggttaaccattctgatttccttccatatgttaacttatttgtataatgtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAA

upper sequence: GRMZM2G030167_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA08G02420.1 (Glycine max), 3'ss of exon 1
gtgatttgatcagacagtttcatatctctttttatgtgtgtacttgtcaatgcccttttttctatgcgtcctcaacttttacttgtttaaaaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGCAAGAAAA
                |||||   |||   |||     | | ||  ||  |   ||    |  |||| ||   ||||  | | |  ||       ||||||||||||| || |||||| ||||| | || ||||| ||||| ||||||| |||||||||||| |||||||||||    || || ||| | |||||||| |
----------------gtttc---tcttcatttcaccattttctcctctttcgtctcccattcatgc-tctaaaactgattcgtacttttccttctgcagGAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACCAGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGA

upper sequence: GRMZM2G030167_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA08G02390.2 (Glycine max), 3'ss of exon 1
gtgatttgatcagacagtttcatatctctttttatgtgtgtacttgtcaatgcccttttttctatgcgtcctcaacttttact-tgtttaaaaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGCAAGAAAA
                      | ||||||  | |   |    |   || |  ||  | ||   | |||  ||||  |  |   |  ||       ||||||||||||| || |||||| ||||| | |||||||| || || ||||||||||||||||| || ||||||||||||   || || ||| | |||||||| |
---------------------gtttctcttcatttcattaccttcaccattttcccctctttcgt-cgttttcaaactgaatcgtacttttccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGA

upper sequence: GRMZM2G030167_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA05G37160.1 (Glycine max), 3'ss of exon 1
gtgatttgatcagacagtttcatatctctttttatgtgtgtacttgtcaatgcccttttttctatgcgtcctcaacttttacttgtttaaaaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGCAAGAAAA
                      | |||   |||     | | ||  ||  |    |    |  |||| || | |||     | |  ||       ||||||||||||| || |||||| ||||| | || ||||| || || ||||||||||||||||| || ||||||||||||   || || ||| | |||||||| |
---------------------gtttcttcatttcgccatttcctcctctttcgtttcaaattcatgc-tcttaaacggaatcgtacttttccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGA

upper sequence: GRMZM2G030167_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA05G37150.1 (Glycine max), 3'ss of exon 1
gtgatttgatcagacagtttcatatctctttttatgtgtgtacttgtcaatgcccttttttctatgcgtcctcaacttttacttgtttaaaaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGCAAGAAAA
                        | ||||  | |     |  |   |  |  | |||    |    |  || |||     |    ||       ||||||||||||| || |||||| ||||| | || ||||| || || ||||||||||||||||| || ||||||||||||   || |||||| | |||||||| |
-----------------------gtttcttcatttcaccattttctcccttttcgtttccaattcatgctctaaacggagtcgcacttttccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTTGAAATTCGCAAGAAGA

upper sequence: GRMZM2G030167_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA05G37190.1 (Glycine max), 3'ss of exon 1
gtgatttgatcagacagtttcatatctctttttatgtgtgtacttgtcaatgcccttttttctatgcgtcctcaacttttacttgtttaaaaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGCAAGAAAA
                      | |||   |||     | | ||  ||  |    |    |  |||| || | |||     | |  ||       ||||||||||||| || |||||| ||||| | || ||||| || || ||||||||||||||||| || ||||||||||||   || |||||| | |||||||| |
---------------------gtttcttcatttcgccatttcctcctctttcgtttcaaattcatgc-tcttaaacggaatcgtacttttccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTTGAAATTCGCAAGAAGA

upper sequence: GRMZM2G030167_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT1G64200.1 (Arabidopsis thaliana), 3'ss of exon 1
-gtgatttgatcagacagtttcatatctctttttatgtgtgtacttgtcaatgcccttttttctatgcgtcctcaacttttacttgtttaaaaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGCAAGAAAA
  |   ||||||      | | |     || | |  |  | |   ||   |||      |   | || |||   |||   |   | |||  |   |  |||||||||||||||||||| ||||||||||||||||| ||||| |||||||| || |||||||||||    || ||||| ||||| || ||  | ||||| |
tttacattgatcttcggatcttaagatcctctgtgagattatttctgaacatgaaaaaatggttttgagtctaaaaccgattggtcttttgatg-tgacagGAATTCAACATTGAGAAATTGCAGCTTGTTGAAGCAGAGAAGAAGAAGATTAGACAAGAGTATGAGAAGAAGGAGAAACAGGTCGATGTCAGAAAGAAGA

upper sequence: GRMZM2G030167_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv02s0025g01000.t01 (Vitis vinifera), 3'ss of exon 1
------gtgatttgatcagacagtttcatatctctttttatgtgtgtacttgtcaatgcccttttttctatgcgtcctcaacttttacttgtttaaaaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGCAAGAAAA
        ||||       | |||||        ||  ||  |       | |  |||    ||| | |||| ||  | |   |||| | |         ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || || ||||| || ||||||||||| |||||  | || |||||||
ttgtagtcgattaagctgtagagtttggatcagattgatacata-acgtatatggatgtggatttgt-tatg-gtattgatggtttagtggc---ggtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATCAGACAGGAATATGAGCGAAAAGAGAAGCAAGTTGATATTCGGAAGAAAA

upper sequence: GRMZM2G030167_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S269_15V6.1 (Physcomitrella patens), 3'ss of exon 1
gtgatttgatcagacagtttcatatctctttttatgtgtgtacttgtcaatgcccttttttctatgcgtcctcaacttttacttgtttaaaaact--tgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGCAAGAAAA
 | | ||||| |  | |||    |     ||  ||||    |  |||  |   | | | || ||| ||   | || | ||  |               |||||||||||||||||||||||| ||| |||| |||||||| || ||||| ||  |||| |||| ||| || || |||||||| || ||||| |||   ||||
-tcaattgatgattccgttggtaaggctcttccatgttatcaactgtgcaacacgtgtcttatat-cggaattaaatgttgttgaggggtggttcaacgcagGAATTCAACATTGAGAAGTTACAGATTGTAGAAGCTGAAAAGAAGAAAATTCGGCAGGAGTTTGAGCGTAAGGAGAAGCAAGTGGAAGTTCGCCGTAAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211540630|gb|FL330698.1|FL330698
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAAGAAGAT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAA-GAAGAT
EST: gi|211276379|gb|FL349487.1|FL349487
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211291090|gb|FL325933.1|FL325933
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGA
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGA
EST: gi|9952749|gb|BE639212.1|BE639212
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211364769|gb|FL332271.1|FL332271
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211035351|gb|FL313985.1|FL313985
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211420284|gb|FL357504.1|FL357504
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|60352605|gb|DN219578.1|DN219578
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|32822977|gb|CD962686.1|CD962686
EST:     GATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211213389|gb|FL334789.1|FL334789
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211232954|gb|FL335277.1|FL335277
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211451130|gb|FL341689.1|FL341689
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|148991268|gb|EE032738.2|EE032738
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211200609|gb|FL339171.1|FL339171
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211044399|gb|FL359392.1|FL359392
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211104389|gb|FL367376.1|FL367376
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211070144|gb|FL344923.1|FL344923
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211485763|gb|FL313358.1|FL313358
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211237184|gb|FL328606.1|FL328606
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211305629|gb|FL309428.1|FL309428
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211237924|gb|FL362197.1|FL362197
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|60343554|gb|DN210527.1|DN210527
EST:     GCCAGGAGGCNGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211412071|gb|FL337699.1|FL337699
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211265837|gb|FL364913.1|FL364913
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|148951970|gb|EC897749.2|EC897749
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211531330|gb|FL321015.1|FL321015
EST:     GCCAGGAGGCCGACGAGAAGGTCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211320274|gb|FL341492.1|FL341492
EST:     GSCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211171811|gb|FL323268.1|FL323268
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211403892|gb|FL317358.1|FL317358
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211137908|gb|FL317645.1|FL317645
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211222210|gb|FL315343.1|FL315343
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|149037738|gb|EE155400.2|EE155400
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211267964|gb|FL352330.1|FL352330
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211118984|gb|FL350355.1|FL350355
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211444767|gb|FL341645.1|FL341645
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211291344|gb|FL337530.1|FL337530
EST:     GCCAGGAGG-CGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|67023589|gb|CO452338.1|CO452338
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|149078560|gb|EE167343.2|EE167343
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211258041|gb|FL344571.1|FL344571
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|91869925|gb|EB400611.1|EB400611
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211462573|gb|FL333678.1|FL333678
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211467651|gb|FL334989.1|FL334989
EST:     GCCA-GAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|78087840|gb|DV516233.1|DV516233
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211525292|gb|FL320506.1|FL320506
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211299385|gb|FL312701.1|FL312701
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211246638|gb|FL353252.1|FL353252
EST:     GCCAGGAGGCCGACGAGAAGGCCAACTAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGA
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGA
EST: gi|211532059|gb|FL347523.1|FL347523
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211036152|gb|FL345793.1|FL345793
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211318737|gb|FL359250.1|FL359250
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|60350601|gb|DN217574.1|DN217574
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211352190|gb|FL343928.1|FL343928
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGTTTCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|60356696|gb|DN223669.1|DN223669
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|9952746|gb|BE639209.1|BE639209
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|213173804|gb|FM191831.1|FM191831
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211277758|gb|FL330396.1|FL330396
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211515166|gb|FL354446.1|FL354446
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|149100211|gb|EE186273.2|EE186273
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211126002|gb|FL346642.1|FL346642
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|149086621|gb|EE176163.2|EE176163
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211145066|gb|FL314886.1|FL314886
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
EST: gi|211522480|gb|FL328360.1|FL328360
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 875

GAATGACGCCGATGTATCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGCAAGAAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1735

GAATGACGCCGATGTATCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGCAAGAAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1005

GAATGACGCCGATGTATCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGCAAGAAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1323

GAATGACGCCGATGTATCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttac ... aaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGCAAGAAAA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcaatgcccttttttctatgcgtcctcaacttttacttgtttaaaaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGCAAGAAAA
                               ttttacttgtttaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgatttgatcagacagtttcatatctctttttatgtgtgtacttgtcaatgcccttttttctatgcgtcctcaacttttacttgtttaaaaacttgcagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGCAAGAAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
-tgatttg
- - - - - - - - - ttcatat
- - - - - - - - - - - - - - - - - - - -gtacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttacttg