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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtccagattcagatgtgctgtgttcttctccccgtcgtaccagctcaactgttctcggtgtagaataaccgcttgatgtcgcatgtaatgtccagTGGGTCAATGATCTGCATGCTCTTATCAGCCCGCCGGCCAAAGGGACTCCGCTCACCCTCGTTCTGCTTGGCAAA

Basic information

species Zea mays
transcript GRMZM2G029824_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029824_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g02590.4 (Oryza sativa), 3'ss of exon 1
---------------gtcagtccagattcagatgtgctgtgttcttctccccgtcgtac------cagctcaactgttctcggtgtagaataac-cgcttgatgtcgcatgtaatgtccagTGGGTCAATGATCTGCATGCTCTTATCAGCCCGCCGGCCAAAGGGACTCCGCTCACCCTCGTTCTGCTTGGCAAA
                ||  |||    |     || ||  |||  |       ||| ||       | |||| |      |    ||   |    |   || |   |  |   || | |||||||||||||||||||||| |||||||||||| || || || |||||||| || || || ||  ||||||| || 
gtcactaacgatgatatccttccttgcttgctagtacta-gttgatacttgtatcgaacagcagttaactcagcgtcaggcaacttatgttctttcaactgtttctgtcttgcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32824642|gb|CD964364.1|CD964364
EST:     AGGTCGACAGATCGACCACCTTGGCTCGCAAAGTCTTCCGGCTCCTCAAG                         TGGGTCAATGATCTGCATGCTCTTATCAGCCCGCCGGCCAAAGGGACTCCG
genomic: AGGTCGACAGATCGACCACCTTGGCTCGCAAAGTCTTCCGGCTCCTCAAGgtcagtccag ... taatgtccagTGGGTCAATGATCTGCATGCTCTTATCAGCCCGCCGGCCAAAGGGACTCCG
EST: gi|32824901|gb|CD964623.1|CD964623
EST:     AGGTCGACAGATCGGCTACCTTGGCTCGCAAAGTCTTCCGGCTCCTCAAG                         TGGGTCAATGATCTGCATGCTCTTATCAGCCCGCCGGCCAAAGGGACTCCG
genomic: AGGTCGACAGATCGACCACCTTGGCTCGCAAAGTCTTCCGGCTCCTCAAGgtcagtccag ... taatgtccagTGGGTCAATGATCTGCATGCTCTTATCAGCCCGCCGGCCAAAGGGACTCCG
EST: gi|76010688|gb|DT937858.1|DT937858
EST:     AGGTCGACAGATCGACCACCTTGGCTCGCAAAGTCTTCCGGCTCCTCAAG                         TGGGTCAATGATCTGCATGCTCTTATCAGCCCGCCGGCCAAAGGGACTCCG
genomic: AGGTCGACAGATCGACCACCTTGGCTCGCAAAGTCTTCCGGCTCCTCAAGgtcagtccag ... taatgtccagTGGGTCAATGATCTGCATGCTCTTATCAGCCCGCCGGCCAAAGGGACTCCG
EST: gi|32791123|gb|CD943359.1|CD943359
EST:     AGGTCGACAGATCGACCACCTTGGCTCGCAAAGTCTTCCGGCTCCTCAAG                         TGGGTCAATGATCTGCATGCTCTTATCAGCCCGCCGGCCAAAGGGACTCCG
genomic: AGGTCGACAGATCGACCACCTTGGCTCGCAAAGTCTTCCGGCTCCTCAAGgtcagtccag ... taatgtccagTGGGTCAATGATCTGCATGCTCTTATCAGCCCGCCGGCCAAAGGGACTCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagctcaactgttctcggtgtagaataaccgcttgatgtcgcatgtaatgtccagTGGGTCAATGATCTGCATGCTCTTATCAGCCCGCCGGCCAAAGGGACTCCGCTCACCCTCGTTCTGCTTGGCAAA
                    tagaataa  TA-rich tract