1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tatgtgctggttacagcaaacagtttattgtgtgtgtgtgtgtgtggggggggggggtcagtatttctctgactgttgtgaaatgtcgttttttatttagGTTGAAACTGTTGATGACTATGACGAGTATTGTCACTATGTAGCCGGGCTAGTTGGTTATGGACTTTCCAGGCTCTTTTATGCTGCTGGGACGGAAGATC
species | Zea mays |
transcript | GRMZM2G029396_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAATCACTAGGCGAATGGGAGCAGGAATGGCAAAATTTATATGCAAGGAG GTTGAAACTGTTGATGACTATGACGAGTATTGTCACTATGTAGCCGGGCTAEST: gi|211142093|gb|FL424854.1|FL424854
genomic: AAATCACTAGGCGAATGGGAGCAGGAATGGCAAAATTTATATGCAAGGAGgtatgctaac ... ttttatttagGTTGAAACTGTTGATGACTATGACGAGTATTGTCACTATGTAGCCGGGCTA
EST: AATCACTAGGCGAATGGGAGCAGGAATGGCAAAATTTATATGCAAGGAG GTTGAAACTGTTGATGACTATGACGAGTATTGTCACTATGTAGCCGGGTTA
genomic: AATCACTAGGCGAATGGGAGCAGGAATGGCAAAATTTATATGCAAGGAGgtatgctaac ... ttttatttagGTTGAAACTGTTGATGACTATGACGAGTATTGTCACTATGTAGCCGGGCTA
ggggggggggggtcagtatttctctgactgttgtgaaatgtcgttttttatttagGTTGAAACTGTTGATGACTATGACGAGTATTGTCACTATGTAGCCGGGCTAGTTGGTTATGGACTTTCCAGGCTCTTTTATGCTGCTGGGACGGAAGATC
ctctgac putative branch site (score: 150)
ttttttattt putative PPT
tcgttttttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgtgctggttacagcaaacagtttattgtgtgtgtgtgtgtgtggggggggggggtcagtatttctctgactgttgtgaaatgtcgttttttatttagGTTGAAACTGTTGATGACTATGACGAGTATTGTCACTATGTAGCCGGGCTAGTTGGTTATGGACTTTCCAGGCTCTTTTATGCTGCTGGGACGGAAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- -gtgctgg
- - - - - - -cagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttgt