1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgacgaatttctcccacctcgtcagaatcgcatcttggctctgagtttcttggtttctttggcgagttgttcctgatgacgtccattttttttcagATACAAGAACTGCTTCGAGGGGCCAAGGATGTCATGTCGCTTGCGCAG
species | Zea mays |
transcript | GRMZM2G029135_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTAAACTGGCGAGGAGGGCGGTGGAGACGGACGCGCCGGTCATGGTCAAG ATACAAGAACTGCTTCGAGGGGCCAAGGATGTCATGTCGCTTGCGCAGEST: gi|148944112|gb|EC889198.2|EC889198
genomic: TTAAACTGGCGAGGAGGGCGGTGGAGACGGACGCGCCGGTCATGGTCAAGgtgacgaatt ... tttttttcagATACAAGAACTGCTTCGAGGGGCCAAGGATGTCATGTCGCTTGCGCAG
EST: TTAAACTGGCGAGGAGGGCGGTGGAGACGGACGCGCCGGTCATGGTCAAG ATACAAGAACTGCTTCGAGGGGCCAAGGATGTCATGTCGCTTGCGCAGEST: gi|71444321|gb|DR825371.1|DR825371
genomic: TTAAACTGGCGAGGAGGGCGGTGGAGACGGACGCGCCGGTCATGGTCAAGgtgacgaatt ... tttttttcagATACAAGAACTGCTTCGAGGGGCCAAGGATGTCATGTCGCTTGCGCAG
EST: TTAAACTGGCGAGGAGGGCGGTGGAGACGGACGCGCCGGTCATGGTCAAG ATACAAGAACTGCTTCGAGGGGCCAAGGATGTCATGTCGCTTGCGCAGEST: gi|149102126|gb|EE287567.2|EE287567
genomic: TTAAACTGGCGAGGAGGGCGGTGGAGACGGACGCGCCGGTCATGGTCAAGgtgacgaatt ... tttttttcagATACAAGAACTGCTTCGAGGGGCCAAGGATGTCATGTCGCTTGCGCAG
EST: TTAAACTGGCGAGGAGGGCGGTGGAGACGGACGCGCCGGTCATGGTCAAG ATACAAGAACTGCTTCGAGGGGCCAAGGATGTCATGTCGCTTGCGCAG
genomic: TTAAACTGGCGAGGAGGGCGGTGGAGACGGACGCGCCGGTCATGGTCAAGgtgacgaatt ... tttttttcagATACAAGAACTGCTTCGAGGGGCCAAGGATGTCATGTCGCTTGCGCAG
tgagtttcttggtttctttggcgagttgttcctgatgacgtccattttttttcagATACAAGAACTGCTTCGAGGGGCCAAGGATGTCATGTCGCTTGCGCAG
tcctgat putative branch site (score: 184)
cgtccattttttttc putative PPT
attttttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacgaatttctcccacctcgtcagaatcgcatcttggctctgagtttcttggtttctttggcgagttgttcctgatgacgtccattttttttcagATACAAGAACTGCTTCGAGGGGCCAAGGATGTCATGTCGCTTGCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG