1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...aaaaaatgctaagctgcaggttttgcttacaacaaaaaatatagttaccagattttgtcgttatgtttgctggtttcacatttattatgctgtcttacagGTGGGCACGGCTGTTGTCACTGGCATGAATGGCCGATTGGCCATGGGGAGGCTCGGTTCTCTCTGTGAACAG
species | Zea mays |
transcript | GRMZM2G028535_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGATCCTGCCCGTGCATTCGTGAAGGACGTCAAGCGAATCATTATCAAG GTGGGCACGGCTGTTGTCACTGGCATGAATGGCCGATTGGCCATGGGGAGGEST: gi|74239241|gb|DT647155.1|DT647155
genomic: CCGATCCTGCCCGTGCATTCGTGAAGGACGTCAAGCGAATCATTATCAAGgtgattggcc ... tgtcttacagGTGGGCACGGCTGTTGTCACTGGCATGAATGGCCGATTGGCCATGGGGAGG
EST: CCGATCCTGCCCGTGCATTCGTGAAGGACCTCAAGCGAATCATTATCAAG GTGGGCACGGCTGTTGTCACTGGCATGAATGGCCGATTGGCCATGGGGAGGEST: gi|88755722|gb|DY539863.1|DY539863
genomic: CCGATCCTGCCCGTGCATTCGTGAAGGACGTCAAGCGAATCATTATCAAGgtgattggcc ... tgtcttacagGTGGGCACGGCTGTTGTCACTGGCATGAATGGCCGATTGGCCATGGGGAGG
EST: CCGATCCTGCCCGTGCATTCGTGAAGGACGTCAAGCGAATCATTATCAAG GTGGGCACGGCTGTTGTCACTGGCATGAATGGCCGATTGGCCATGGGGAGGEST: gi|149066720|gb|EE286861.2|EE286861
genomic: CCGATCCTGCCCGTGCATTCGTGAAGGACGTCAAGCGAATCATTATCAAGgtgattggcc ... tgtcttacagGTGGGCACGGCTGTTGTCACTGGCATGAATGGCCGATTGGCCATGGGGAGG
EST: CCGATCCTGCCCGTGCATTCGTGAAGGACGTCAAGCGAATCATTATCAAG GTGGGCACGGCTGTTGTCACTGGCATGAATGGCCGATTGGCCATGGGGAGGEST: gi|74245732|gb|DT653646.1|DT653646
genomic: CCGATCCTGCCCGTGCATTCGTGAAGGACGTCAAGCGAATCATTATCAAGgtgattggcc ... tgtcttacagGTGGGCACGGCTGTTGTCACTGGCATGAATGGCCGATTGGCCATGGGGAGG
EST: CCGATCCTGCCCGTGCATTCGTGAAGGACGTCAAGCGAATCATTATCAAG GTGGGCACGGCTGTTGTCACTGGCATGAATGGCCGATTGGCCATGGGGAGGEST: gi|101391687|gb|EB817780.1|EB817780
genomic: CCGATCCTGCCCGTGCATTCGTGAAGGACGTCAAGCGAATCATTATCAAGgtgattggcc ... tgtcttacagGTGGGCACGGCTGTTGTCACTGGCATGAATGGCCGATTGGCCATGGGGAGG
EST: CCGATCCTGCCCGTGCATTCGTGAAGGACGTCAAGCGAATCATTATCAAG GTGGGCACGGCTGTTGTCACTGGCATGAATGGCCGATTGGCCATGGGGAGG
genomic: CCGATCCTGCCCGTGCATTCGTGAAGGACGTCAAGCGAATCATTATCAAGgtgattggcc ... tgtcttacagGTGGGCACGGCTGTTGTCACTGGCATGAATGGCCGATTGGCCATGGGGAGG
taccagattttgtcgttatgtttgctggtttcacatttattatgctgtcttacagGTGGGCACGGCTGTTGTCACTGGCATGAATGGCCGATTGGCCATGGGGAGGCTCGGTTCTCTCTGTGAACAG
ctgtctt CT-rich tract
tttcacatttattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaatgctaagctgcaggttttgcttacaacaaaaaatatagttaccagattttgtcgttatgtttgctggtttcacatttattatgctgtcttacagGTGGGCACGGCTGTTGTCACTGGCATGAATGGCCGATTGGCCATGGGGAGGCTCGGTTCTCTCTGTGAACAG
aaaaaat
- - - - - - gctgcag
- - - - - - - - - - - -tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgctg