1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtcttatgtgatgctggattgctttgtttttacgaaacccgctctagttatactgaaggaactgatcatttctttatcttaatggtgcacttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAAGTTTTGATTAGACTAGAAGACAGCATCATATTTGGCCTTTTGGAGAGA
species | Zea mays |
transcript | GRMZM2G028369_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211092233|gb|FL378442.1|FL378442
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211490416|gb|FL381909.1|FL381909
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211027365|gb|FL058974.1|FL058974
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAAGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211027362|gb|FL058971.1|FL058971
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211029808|gb|FL058986.1|FL058986
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211027366|gb|FL058975.1|FL058975
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|9824918|gb|BE575015.1|BE575015
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211027371|gb|FL058980.1|FL058980
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211027370|gb|FL058979.1|FL058979
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211029814|gb|FL058992.1|FL058992
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|149067525|gb|EE157731.2|EE157731
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211024914|gb|FL058965.1|FL058965
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTTCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211029809|gb|FL058987.1|FL058987
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|71449541|gb|DR830591.1|DR830591
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|148987695|gb|EE031582.2|EE031582
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211027360|gb|FL058969.1|FL058969
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|91872761|gb|EB402718.1|EB402718
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211148548|gb|FL374616.1|FL374616
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211488629|gb|FL426432.1|FL426432
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211387290|gb|FL388817.1|FL388817
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211063320|gb|FL403461.1|FL403461
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211029804|gb|FL058982.1|FL058982
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|78104614|gb|DV523032.1|DV523032
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|71447644|gb|DR828694.1|DR828694
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211029806|gb|FL058984.1|FL058984
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACEST: gi|211027363|gb|FL058972.1|FL058972
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCT-AAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGAC
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGWGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|32926797|gb|CF031609.1|CF031609
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211442013|gb|FL419339.1|FL419339
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211027358|gb|FL058967.1|FL058967
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211027357|gb|FL058966.1|FL058966
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211029812|gb|FL058990.1|FL058990
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|32849098|gb|CD988779.1|CD988779
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211027359|gb|FL058968.1|FL058968
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|89764470|gb|DY691264.1|DY691264
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAEST: gi|211027367|gb|FL058976.1|FL058976
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
EST: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAA GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
genomic: AGAAACAAGGGGCTCCGCGCGGCCAACAACTCCGCGACGCCCGTGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACA
tagttatactgaaggaactgatcatttctttatcttaatggtgcacttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAAGTTTTGATTAGACTAGAAGACAGCATCATATTTGGCCTTTTGGAGAGA
tcttaat putative branch site (score: 249)
cttttatt putative PPT
atttctttatcttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcttatgtgatgctggattgctttgtttttacgaaacccgctctagttatactgaaggaactgatcatttctttatcttaatggtgcacttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATTAGACAAGTTTTGATTAGACTAGAAGACAGCATCATATTTGGCCTTTTGGAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - gatgctg
- - - - - - - - - - tgctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgca