1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgttcagtatggatgaccttgttttcaagttgcattatgctctaggagtcttgtgaatttgaaatacataatgttcattgactttataaacttgaacagAAATACTTTGGTGCTGCATTGGGGAAGGGAAGGCAGGCCGCAAAGAC
species | Zea mays |
transcript | GRMZM2G028346_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATAGGGATGGGCCACAGCTTTACATGATAGAGCCCTCAGGAGTTTCCTAT AAATACTTTGGTGCTGCATTGGGGAAGGGAAGGCAGGCCGCAAAGACEST: gi|32933640|gb|CF038452.1|CF038452
genomic: ATAGGGATGGACCACAGCTTTACATGATAGAGCCCTCAGGAGTTTCCTATgtaagttgtt ... acttgaacagAAATACTTTGGTGCTGCATTGGGGAAGGGAAGGCAGGCCGCAAAGAC
EST: ATAGGGATGGGCCACAGCTTTACATGATAGAGCCCTCAGGAGTTTCCTAT AAATACTTTGGTGCTGCATTGGGGAAGGGAAGGCAGGCCGCAAAGACEST: gi|211169213|gb|FL479845.1|FL479845
genomic: ATAGGGATGGACCACAGCTTTACATGATAGAGCCCTCAGGAGTTTCCTATgtaagttgtt ... acttgaacagAAATACTTTGGTGCTGCATTGGGGAAGGGAAGGCAGGCCGCAAAGAC
EST: TTTACATGATAGAGCCCTCAGGAGTTTCCTAT AAATACTTTGGTGCTGCATTGGGGAAGGGAAGGCAGGCCGCAAAGACEST: gi|12969059|gb|BG266004.1|BG266004
genomic: TTTACATGATAGAGCCCTCAGGAGTTTCCTATgtaagttgtt ... acttgaacagAAATACTTTGGTGCTGCATTGGGGAAGGGAAGGCAGGCCGCAAAGAC
EST: ATAGGGATGGGCCACAGCTTTACATGATAGAGCCCTCAGGAGTTTCCTAT AAATACTTTGGTGCTGCATTGGGGAAGGGAAGGCAGGCCGCAAAGAC
genomic: ATAGGGATGGACCACAGCTTTACATGATAGAGCCCTCAGGAGTTTCCTATgtaagttgtt ... acttgaacagAAATACTTTGGTGCTGCATTGGGGAAGGGAAGGCAGGCCGCAAAGAC
ggagtcttgtgaatttgaaatacataatgttcattgactttataaacttgaacagAAATACTTTGGTGCTGCATTGGGGAAGGGAAGGCAGGCCGCAAAGAC
cattgac putative branch site (score: 120)
aatttgaaatacataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttcagtatggatgaccttgttttcaagttgcattatgctctaggagtcttgtgaatttgaaatacataatgttcattgactttataaacttgaacagAAATACTTTGGTGCTGCATTGGGGAAGGGAAGGCAGGCCGCAAAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - -atggatg
- - - - - - - - - cttgttt
- - - - - - - - - - - - - - - ttgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataca