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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgccctgttgccctgctttccctgattccattacctccctaatctagaacgttcgagtagatctgggggttggtttgtcgcgcggttcctgtgtttttgtggagattttttacttttacctgtgtgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAGTATCCTTCCAAGTGAACAGTTACTTTATCTTGTGTATTTGTTTGTG

Basic information

species Zea mays
transcript GRMZM2G028096_T05
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028096_T05 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g39300.1 (Oryza sativa), 3'ss of exon 1
gtacgtgccctgt--tgccctgctttccctgattccattacctccctaatctagaacgttcgagtagatctgg-gggttggtttgtcgcgcggttcctgtgtttttgtggagattttttacttttacctgtgtgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAGTATCCTTCCAAGTGAACAGTTACTTTATCTTGTGTATTTGTTTGTG
|| ||| ||| ||  | | ||   | ||||     |    || ||     ||| | |   | | |  |||    || || | || ||||| || |  ||||    || |  |   ||||  ||||           |||||||||||||||||||| || ||||||||| ||||||||||||| |||||||| ||                                               
gtgcgttccccgtgctactctcgatcccctcgcggcggagccccctc---ctatatc--cccactccatccatcggattcggttatcgcgtggctgatgtgcgcctgcgttg---ttttgttttt-----------ttgcagAAGATGGACATGGGGCCATGCCCGAAGATGCACTCGCTGCAGCTGCGCAAGGA-----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211340509|gb|FL126038.1|FL126038
EST:     GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC                         AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: gi|211345283|gb|FL126056.1|FL126056
EST:     GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC                         AGGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTG
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTG
EST: gi|211342894|gb|FL126043.1|FL126043
EST:     GCCGCCTCTACCTCGCCGGSCTCTGCCCCCACGACCTCTTCCAGCTTACC                         AAGATGGACATGGGGCCGTGCC-GAAGCTGCACTCGCTGC
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGC
EST: gi|211340508|gb|FL126037.1|FL126037
EST:     GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC                         AAGATGGACATGGGCCCGTGCC-GAAGCTGCACTC
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgcggttcctgtgtttttgtggagattttttacttttacctgtgtgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGAGTATCCTTCCAAGTGAACAGTTACTTTATCTTGTGTATTTGTTTGTG
                       agattttttactttta  TA-rich tract