1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacgtgccctgttgccctgctttccctgattccattacctccctaatctagaacgttcgagtagatctgggggttggtttgtcgcgcggttcctgtgtttttgtggagattttttacttttacctgtgtgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA
species | Zea mays |
transcript | GRMZM2G028096_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC AGGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAEST: gi|211342903|gb|FL126052.1|FL126052
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAEST: gi|211340509|gb|FL126038.1|FL126038
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAEST: gi|211342892|gb|FL126041.1|FL126041
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGTTTACC AGGGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAEST: gi|211345283|gb|FL126056.1|FL126056
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAG-ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAA
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC AGGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGEST: gi|211342894|gb|FL126043.1|FL126043
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTG
EST: GCCGCCTCTACCTCGCCGGSCTCTGCCCCCACGACCTCTTCCAGCTTACC AAGATGGACATGGGGCCGTGCC-GAAGCTGCACTCGCTGCEST: gi|211340510|gb|FL126039.1|FL126039
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGC
EST: GCCGCCTCTACCTCGCCGGCCTCTGNCCCCACGACCTCTTCCAGNTTACC AGGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAEST: gi|211340508|gb|FL126037.1|FL126037
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC AAGATGGACATGGGCCCGTGCC-GAAGCTGCACTC
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTC
gcgcggttcctgtgtttttgtggagattttttacttttacctgtgtgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA
agattttttactttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgccctgttgccctgctttccctgattccattacctccctaatctagaacgttcgagtagatctgggggttggtttgtcgcgcggttcctgtgtttttgtggagattttttacttttacctgtgtgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG