1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtacgtgccctgttgccctgctttccctgattccattacctccctaatctagaacgttcgagtagatctgggggttggtttgtcgcgcggttcctgtgtttttgtggagattttttacttttacctgtgtgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA
species | Zea mays |
transcript | GRMZM2G028096_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAEST: gi|211342904|gb|FL126053.1|FL126053
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAEST: gi|211342898|gb|FL126047.1|FL126047
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC AGGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAEST: gi|211342902|gb|FL126051.1|FL126051
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAEST: gi|211340511|gb|FL126040.1|FL126040
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC AGGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAEST: gi|211342905|gb|FL126054.1|FL126054
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAEST: gi|211342900|gb|FL126049.1|FL126049
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC AGGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAEST: gi|71764556|gb|DR962493.1|DR962493
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAEST: gi|74232160|gb|DT640074.1|DT640074
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAEST: gi|211342892|gb|FL126041.1|FL126041
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGTTTACC AGGGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAEST: gi|211340509|gb|FL126038.1|FL126038
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAG-ATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAA
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAEST: gi|211345283|gb|FL126056.1|FL126056
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC AGGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGEST: gi|211342897|gb|FL126046.1|FL126046
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTG
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAEST: gi|211342893|gb|FL126042.1|FL126042
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC AGGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAEST: gi|211342896|gb|FL126045.1|FL126045
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC AGGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAEST: gi|211340507|gb|FL126036.1|FL126036
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC AAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAEST: gi|211342894|gb|FL126043.1|FL126043
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
EST: GCCGCCTCTACCTCGCCGGSCTCTGCCCCCACGACCTCTTCCAGCTTACC AAGATGGACATGGGGCCGTGCC-GAAGCTGCACTCGCTGCEST: gi|211340508|gb|FL126037.1|FL126037
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGC
EST: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACC AAGATGGACATGGGCCCGTGCC-GAAGCTGCACTCEST: gi|211340510|gb|FL126039.1|FL126039
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTC
EST: GCCGCCTCTACCTCGCCGGCCTCTGNCCCCACGACCTCTTCCAGNTTACC AGGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
genomic: GCCGCCTCTACCTCGCCGGCCTCTGCCCCCACGACCTCTTCCAGCTTACCgtacgtgccc ... tgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAA
gcgcggttcctgtgtttttgtggagattttttacttttacctgtgtgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA
agattttttactttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgccctgttgccctgctttccctgattccattacctccctaatctagaacgttcgagtagatctgggggttggtttgtcgcgcggttcctgtgtttttgtggagattttttacttttacctgtgtgttttgcagAAGATGGACATGGGCCCGTGCCCGAAGCTGCACTCGCTGCAACTGCGCAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG