1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcttctacgtgaatctgcgggttctcttttaagatttcacctgtcacgacgcctgaaatcatatggaatgctagggtttcgcggtaggtttggtgatgcagtgctttgttacgactgtggctatgcagATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTACTCCACTGGAAGCGATGTGCACGACACCGACATGCAAATCCACAAAGCC
species | Zea mays |
transcript | GRMZM2G028089_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTCTCCGGCACCCTCGACCGCGCCTTCCTCGAGAAGAAGCAGGAGCTCT ATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTACTCCACTGGAAEST: gi|148964739|gb|EC906002.2|EC906002
genomic: AGTCTCCGGCACCCTCGACCGCGCCTTCCTCGAGAAGAAGCAGGAGCTCTgtaagcttct ... ggctatgcagATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTACTCCACTGGAA
EST: AGTCTCCGGCACCCTCGACCGCGCCTTCCTCGAGAAGAAGCAGGAGCTCT ATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTACTCCACTGGAAEST: gi|71427075|gb|DR808125.1|DR808125
genomic: AGTCTCCGGCACCCTCGACCGCGCCTTCCTCGAGAAGAAGCAGGAGCTCTgtaagcttct ... ggctatgcagATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTACTCCACTGGAA
EST: AGTCTCCGGCACCCTCGACCGCGCCTTCCTCGAGAAGAAGCAGGAGCTCT ATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTACTCCACTGGAAEST: gi|78079914|gb|DV508326.1|DV508326
genomic: AGTCTCCGGCACCCTCGACCGCGCCTTCCTCGAGAAGAAGCAGGAGCTCTgtaagcttct ... ggctatgcagATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTACTCCACTGGAA
EST: AGTCTCCGGCACCCTCGACCGCGCCTTCCTCGAGAAGAAGCAGGAGCTCT ATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTACTCCACTGGAAEST: gi|76020044|gb|DT947214.1|DT947214
genomic: AGTCTCCGGCACCCTCGACCGCGCCTTCCTCGAGAAGAAGCAGGAGCTCTgtaagcttct ... ggctatgcagATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTACTCCACTGGAA
EST: AGTCTCCGGCACCCTCGACCGCGCCTTCCTCGAGAAGAAGCAGGAGCTCT ATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTACTCCACTGGAAEST: gi|71428767|gb|DR809817.1|DR809817
genomic: AGTCTCCGGCACCCTCGACCGCGCCTTCCTCGAGAAGAAGCAGGAGCTCTgtaagcttct ... ggctatgcagATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTACTCCACTGGAA
EST: AGTCTCCGGCACCCTCGACCGCGCCTTCCTCGAGAAGAAGCAGGAGCTCT ATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTACTCCACTGGAAEST: gi|78090020|gb|DV518394.1|DV518394
genomic: AGTCTCCGGCACCCTCGACCGCGCCTTCCTCGAGAAGAAGCAGGAGCTCTgtaagcttct ... ggctatgcagATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTACTCCACTGGAA
EST: AGTCTCCGGCACCCTCGACCGCGCCTTCCTCGAGAAGAAGCAGGAGCTCT ATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTACCTCCACTGGAEST: gi|78104235|gb|DV522653.1|DV522653
genomic: AGTCTCCGGCACCCTCGACCGCGCCTTCCTCGAGAAGAAGCAGGAGCTCTgtaagcttct ... ggctatgcagATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTAC-TCCACTGGA
EST: GAAGAAGCAGGAGCTCT ATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTACTCCACTGGAAEST: gi|76925807|gb|DV170603.1|DV170603
genomic: GAAGAAGCAGGAGCTCTgtaagcttct ... ggctatgcagATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTACTCCACTGGAA
EST: AGTCTCCGGCACCCTCGACCGCGCCTTCCTCGAGAAGAAGCAGGAGCTCT ATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTACTCCACTGGAA
genomic: AGTCTCCGGCACCCTCGACCGCGCCTTCCTCGAGAAGAAGCAGGAGCTCTgtaagcttct ... ggctatgcagATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTACTCCACTGGAA
gggtttcgcggtaggtttggtgatgcagtgctttgttacgactgtggctatgcagATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTACTCCACTGGAAGCGATGTGCACGACACCGACATGCAAATCCACAAAGCC
tttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttctacgtgaatctgcgggttctcttttaagatttcacctgtcacgacgcctgaaatcatatggaatgctagggtttcgcggtaggtttggtgatgcagtgctttgttacgactgtggctatgcagATAAGAAGGTGTTCCCTGACTTCTACGTGCTCGGTTGGTACTCCACTGGAAGCGATGTGCACGACACCGACATGCAAATCCACAAAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG