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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaccatcgatgccgccgctgcactgcagctcctgctgcaaatgccgacgctccttacaacgtaatataatggctgcttttgcttgtccggccggcagGGGCTGTGCACCGGCGTCGTGATCCTGCTGACCACCAAGGGGAAGAGCTCGCACATCCTCGTCTTCAGCGAGGACCTCTTCTTCATCTACCTCCTACCTC

Basic information

species Zea mays
transcript GRMZM2G027851_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G027851_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 3'ss of exon 1
gtaagcaccatcgatgccgccgctgcactgcagctcctgctgcaaatgccgacgctccttaca-acgtaatataatggctgcttttgcttgtccggccgg-cagGGGCTGTGCACCGGCGTCGTGATCCTGCTGACCACCAAGGGGAAGAGCTCGCACATCCTCGTCTTCAGCGAGGACCTCTTCTTCATCTACCTCCTACCTC
|||||| | |   |  ||   ||||   |  |      | |  |   |||   | | || ||  |||     |  | | || ||| |||||   |   || |||||||| ||||||||||| |||||| ||||||  ||||| ||||||||||||||| |  |||||||||| ||||| |||||||||||||||||||| ||||
gtaagcgc-acacacaccattgctgtgattgattgatcgattgattcgccattgttgctgacgcacgcttgctgctcgatgattt-gcttgcttgcttgggcagGGGCTCTGCACCGGCGTGGTGATCTTGCTGATGACCAAAGGGAAGAGCTCGCACTTATTCGTCTTCAGTGAGGATCTCTTCTTCATCTACCTCCTCCCTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccgacgctccttacaacgtaatataatggctgcttttgcttgtccggccggcagGGGCTGTGCACCGGCGTCGTGATCCTGCTGACCACCAAGGGGAAGAGCTCGCACATCCTCGTCTTCAGCGAGGACCTCTTCTTCATCTACCTCCTACCTC
        tccttac  putative branch site (score: 2)
                                       cttgtcc  putative PPT
                   taatataat  TA-rich tract